Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00795 ATGGATCAAAACAGAAGCGAAGAAAGAGGTGGGATACTGGGTCCGGTTCATGAAGGGGTAGATGGGAATTTGAGTCATTTGGTTGAAGGGGTAGTTATTGATGCAGTAGATGGGAACGACTTGGGTGGCAGAGTTGGTATAAGGGGAGAAGCTGGAACTTCAAGAGAGGTGCGTAAGGATTTGGGATCTGAAAAGGAGCTTGAGGAAGTTAAGGGTCAGGACAAGCATGGTGAAGAAAATATTAGTGATAATAAATTGCTTGGGGTTGATCAGGGAACTAGTTATAATCCAAACCATTTGGTTAATCAGGAAGTGATTGAAACTATGGTTGTAATCGAGTCTTTTGAGACTGACTATGTCAACGAGAATAATAGGAAGTTGGAAGCAGAAGTTAATGAATCGGAGTTGAACTTTACATCCATGAAAGTACCAGAAGGGACGTCTGAAACTGATAAAAATTCATGTGTGATTGATATAAAATGCAGCAGCCGCAAAAAGTTTTCTGAGAATTCTGAAGGTGAACAGATTTGTAGGATTTGCCATCTGGCTTCTGTGCAGCCATCGGATGAAAATGAAGCAACCGTTGGCCCTGCTGCTAGTAGTGCTACGTGTTCAGATTTGATTCAGCTTGGTTGTGCATGTAAAGATGAGCTAGGCATTGCACATGTTCATTGTGCTGAGGCGTGGTTCAAGCTTAAGGGGAACAGGTATATATTTTTTCCAAATACCAATTTTGATTCTAGGCTGTAG 750 0.416 MDQNRSEERGGILGPVHEGVDGNLSHLVEGVVIDAVDGNDLGGRVGIRGEAGTSREVRKDLGSEKELEEVKGQDKHGEENISDNKLLGVDQGTSYNPNHLVNQEVIETMVVIESFETDYVNENNRKLEAEVNESELNFTSMKVPEGTSETDKNSCVIDIKCSSRKKFSENSEGEQICRICHLASVQPSDENEATVGPAASSATCSDLIQLGCACKDELGIAHVHCAEAWFKLKGNRYIFFPNTNFDSRL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00795 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 247 IPR013083 -
Vimu2g00795 249 MobiDBLite consensus disorder prediction 55 81 - -
Vimu2g00795 249 PANTHER ZINC FINGER, RING-CH-TYPE 66 236 - -
Vimu2g00795 249 ProSiteProfiles Zinc finger RING-CH-type profile. 169 248 IPR011016 GO:0008270
Vimu2g00795 249 SMART ringv_2 176 237 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00795 Vimu-Chr2 4883067 4883816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00795 157 236 C3H Transcription Factor Family AT5G05830 37.500 1.40e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00795 - - vra:106775190 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00795 2 4883067 4883816 Vimu2g00795 2 4883067 4883816 ECH
Vimu11g03733 11 59382004 59382723 Vimu2g00795 2 4883067 4883816 PCT