LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu2g00794	ATGGAAGATGTCAAAGTGCTTGCTTGTTTAGCTTCCCTCTTTCTGTGTTATTGGGTGCTTCTTGTAGAGGGCACTGATAGCCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTGGCTGCTTTGATGTCCATGAAGAGTAAGATGTATGACGAGTTTAATGCTATGGATGGTTGGGATATTAATTCGGTTGACCCCTGTACTTGGTCTATGGTTGGTTGCTCCGCCGAGGGTTATGTCGTTTCTCTGGAAATGGCCAGTGCGGGTTTATCCGGGACAATTTCCTCAGGAATTGGAAATTTGAGCCACCTTCATACATTGTTATTGCAGAACAATAAGTTATCTGGTCCTATTCCGACTGAGATAGGAAAGCTTTTAGAGCTTCAAACCCTTGACCTCTCTGGTAACCAGCTAGATGGAGAAATTCCTAGTTCATTGGGCTTTTTGACTCATCTTAGTTACTTGCGGCTCAGCAAAAATAAACTATCTGGACAGATCCCTCAGCTTGTTGCTAATCTGACAGACCTTTCATTCTTGGACTTGTCATTCAATAATCTCAGTGGTCCCACTCCACAAATTTTAGCGAAAGGTTATAGTATTTCAGGGAACAGCTTCCTCTGCACTTCTTCTCAAATTTGTATGGGCTTCTCAAAACCAGTTAATGATACAGGGTCATCTCAGTCGACTGGTGGTCATCACCAAAGGGTGCTTGCTGTTGTTATTGGCTTTAGTTGCACATTTGTAATTTCAGTGGTGCTTCTTGTTTTTTGGTTGCATTGGTACAGATCGAACATTCTGTTCACATCTTATGTGGAGCAAGATTGTGAATTTGATATTGGCCATCTGAAGAGGTTCTCCTTCCGTGAATTGCAAATTGCTACTGGAAGTTTCAATTCAAAAAATATCCTAGGGCAAGGTGGTTTCGGTGTTGTCTACAAAGGATGCCTTGCGAATAAAATGTTAGTGGCAGTAAAGAGGTTGAAAGATCCCAACTATACTGGAGAAGTGCAGTTTCAAACAGAAGTTGAGATGATTGGCTTGGCAGTGCATCGAAACCTCTTGCGACTTTATGGATTCTGTATGACACCGGATGAAAGGTTACTTGTTTATCCGTATATGCCCAATGGCAGTGTTGCTGATCGCTTGAGAGAGACTTGCCGTGAAAAGCCATCATTGGACTGGAACAGGCGAATGCGCGTTGCTCTTGGGACAGCACGCGGACTTCTATACTTGCATGAACAGTGCAATCCAAAAATAATCCACAGGGATGTTAAGGCTGCAAACATTTTGTTAGATGAAAGTTTTGAAGCTGTGGTGGGGGATTTTGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACATGTAACTACTGCAGTACGAGGGACAGTAGGTCACATTGCTCCAGAATATCTCTCAACTGGACAGTCATCTGAAAAAACAGATGTTTTTGGATTTGGCATATTACTTTTGGAGCTCATAACAGGACATAAGGCACTTGATGCAGGAAATGCTCAGGTCCAAAAGGGAATGATTCTTGATTGGGTTAGAACCTTATATGAGGAGAAACGGGTGGAAGTGTTAGTGGATAGGGATCTGAGGGGATGTTTTGATCCTGTGGAGTTGGAGAAAGCAGTGGATTTGTCTCTACAGTGTACTCAGTCACTTCCCACTTTGCGGCCAAAGATGTCAGAAGTTCTGAAGATTCTAGAAGGTCTGGTCGGACAGTCAATGCGGGCAGAGGAGTCACAAGGAGTGACTAACCTATACGGTGAAAGGACTTGCAGTTTCTCACAAAATTATATTGATGTTCACGAAGAACCTTCCTTTATTATTGAACCCATTGAGCTCTCTGGACCTCGCTGA	1860	0.4306	MEDVKVLACLASLFLCYWVLLVEGTDSLLSPKGVNYEVAALMSMKSKMYDEFNAMDGWDINSVDPCTWSMVGCSAEGYVVSLEMASAGLSGTISSGIGNLSHLHTLLLQNNKLSGPIPTEIGKLLELQTLDLSGNQLDGEIPSSLGFLTHLSYLRLSKNKLSGQIPQLVANLTDLSFLDLSFNNLSGPTPQILAKGYSISGNSFLCTSSQICMGFSKPVNDTGSSQSTGGHHQRVLAVVIGFSCTFVISVVLLVFWLHWYRSNILFTSYVEQDCEFDIGHLKRFSFRELQIATGSFNSKNILGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRETCREKPSLDWNRRMRVALGTARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDAGNAQVQKGMILDWVRTLYEEKRVEVLVDRDLRGCFDPVELEKAVDLSLQCTQSLPTLRPKMSEVLKILEGLVGQSMRAEESQGVTNLYGERTCSFSQNYIDVHEEPSFIIEPIELSGPR	619

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu2g00794	619	ProSiteProfiles	Protein kinase domain profile.	296	572	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu2g00794	619	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	12	567	-	-
	Vimu2g00794	619	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	418	430	IPR008271	GO:0004672\|GO:0006468
	Vimu2g00794	619	Pfam	Leucine rich repeat N-terminal domain	35	74	IPR013210	-
	Vimu2g00794	619	Gene3D	Transferase(Phosphotransferase) domain 1	372	582	-	-
	Vimu2g00794	619	FunFam	Somatic embryogenesis receptor kinase 1	265	371	-	-
	Vimu2g00794	619	FunFam	Somatic embryogenesis receptor-like kinase 1	372	588	-	-
	Vimu2g00794	619	Gene3D	Ribonuclease Inhibitor	34	212	IPR032675	-
	Vimu2g00794	619	ProSitePatterns	Protein kinases ATP-binding region signature.	302	324	IPR017441	GO:0005524
	Vimu2g00794	619	SUPERFAMILY	L domain-like	36	202	-	-
	Vimu2g00794	619	ProSiteProfiles	Leucine-rich repeat profile.	126	149	IPR001611	GO:0005515
	Vimu2g00794	619	SUPERFAMILY	Protein kinase-like (PK-like)	280	582	IPR011009	-
	Vimu2g00794	619	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	34	214	-	-
	Vimu2g00794	619	Pfam	Protein kinase domain	297	566	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu2g00794	619	Gene3D	Phosphorylase Kinase; domain 1	266	371	-	-
	Vimu2g00794	619	SMART	serkin_6	296	567	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu2g00794	619	PRINTS	Leucine-rich repeat signature	127	140	-	-
	Vimu2g00794	619	PRINTS	Leucine-rich repeat signature	172	185	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu2g00794	Vimu-Chr2	4873639	4878231	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu2g00794	42	619	Receptor kinase-like Gene Family	AT5G45780	70.568	0.0	812

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Vimu2g00794		Pkinase	1.5e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu2g00794	-		-	ccaj:109812711	1156.35