Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00786 ATGGAACTAAGATGGAACACATTTGGATTTTGTCTAAGAATTTATATTTTCTTGTTCTCACTGTGGGGAATCCGAGATTGTTGGTCCGTTAACGATGAAGGACTGGCTTTGTTAGCGTTTCAAGCGAGAATAACCAGTGATCCCTTTAATGCTTTGGTGAATTGGAATCCCAATGATTGTGACCCTTGCGGGTGGTTGGGTGTTCATTGTGTAGATGGTAAAGTGCAAGTCTTGGACTTAAAAGGGTTATCATTGGAAGGGACGCTGGCTCCTGAGCTTGGCAAACTTAATCATCTAAATTCTATTGTATTATGCAAGAATAACTTTTCTGGTGCCATTCCCAAAGAACTTGGAGATTTACCCAAGCTAGAGTTATTAGATTTAAGGGAAAATAATTTGTCAGGAAACATCCCAGCAGAAATTGGCAACATGTCGTTATTAAAACACTTGTTGCTTTGTGACAATAAAATCGAAGGCGATGGTGATCCTCAAGATTGGGGAAAATTCAAATTTCCTTCGAAATCTCTACTTGTTGAAAGTTGTTCATCACATCTATCAACTTTATTTTCCTGCATCAATAGGAAATTTGGACACTGGCAAGCATTTCTCCAAGATTTTTTTTTTCTAACCAGTGGCATTAGTAGTTTCATTACATGTTTTCCTTCCATCTGTAGAGCAATGGTTTTAATTTATAACTCTGTTGTTTTTATGGATGACATATGCAGTGTGTGGCAACGTAACTTCAACCAATGGTACAAATCAGATTCATTGATTATTCTAACCAAAGCAAAACTTAAGAAATTCGCCAATGCCTTTGCTTGGCCACTATTCAAACTAGGGAAGACTGCCTCTCATGGCAATGAAAAAGATTATTGTGACATTCTGCCCAGTTCTGATGTGCCAAAGATAGCCCAAAATGTACCAGAAATTGTTAGTTCTACACGTCGTAAGTTACTTCAGTCTAGTGGTAATAACCTTGCAGCTGTACCTTTCGATGACAAAACACCAATAGAGTTTAGCACTGCTCCAACTACCTTCAGTACTGGAGCTATTCCTGCTGTTCCGGATGCCACTGAGAACCAAAATCAGCCTGCACCCTCAGATCCTAATGCTCCTGATGATGCTTCTGATGAAAATCAATCACAAGATGCTTCCGATGGAAATCAAGAAAGTCAAGATGTAAATAATGGTGCTTCTGTGTGGAAGTGGATAATTATTATTCTTCTTCTGCTGGCCATTATTATCATAATTCTTTTATACATTTGGCGAAAACGAGCCGCAAAAGTAATAGGCCCCTGGAAGACAGGAATAAGTGGACAGTTGCGGAAAGCATTTATAACAGGGGTTCCCAAGTTGAATAGAGCAGAATTAGAGACAGCCTGTGAAGATTTTAGCAATATTGTTATTGATTCTTATGCCGAGTGCACCATCTACAAAGGAACATTGTCTAGTGGAGTTGAGATTGCTGTAGTTTCTACTCTAATTACTTCTTCTAAGAATTGGTCAAAGAGCATGGAGCTAAGATACCGCAAAAAGATTGATAATTTGTCTCGCATAAATCATAAGAACTTTATTAATCTTATTGGCTACTGCGAAGAAGAAGAACCATTCACTAGGATGTTGGTGTTTGAGTATGCTCCAAATGGAAACTTATTTGAGCATTTACATGTATCGCATTTGGAACGTATTGATTGGAGTGCAAGGGTAAAGATTATCATGGGGGTTGCTTATTGCCTTCAATACATGCACCATGACTTAAATCCACCTATGGCACAAAGCAAGCTAGATACAAATATGATATTTTTAACAGATGATTTTTCTGCTAAGATTGCAGAGGTTACTTTTAGACATATTGTGACACCAGAGAGCGTGGGTGATTCAAAGAAATCTGATGATGGGCCATCCGACGAGAATATTGAAACCAATGTTTACCAATTTGGAGAGTTATTGCTGGAAATCATCTCAGGGAAATTACCTTACTCGGTAGAACATGGCAACCTAGTGGACTGGGCTGCAAAGTACTTAAACGAGAAAACAAACCTCAAAGATTTGGTGGATCCCACCCTCCAATGTTTCAAGGAGAACGAACTTCATTGCATTTGTGATGTGATCCAAGACTGTATGAATCCTGATGTAAAGTCAAGACCAACAATGAGGGACGTGACTTCCAAATTAAGGGAAGTGCTTGGTTTGTCACCTGAGCAAGTGGTCCCAAGACTTTCTCCACTCTGGTGGGCTGAATTGGAGATCTTATCAGTGGAGACGACTTAA 2271 0.3915 MELRWNTFGFCLRIYIFLFSLWGIRDCWSVNDEGLALLAFQARITSDPFNALVNWNPNDCDPCGWLGVHCVDGKVQVLDLKGLSLEGTLAPELGKLNHLNSIVLCKNNFSGAIPKELGDLPKLELLDLRENNLSGNIPAEIGNMSLLKHLLLCDNKIEGDGDPQDWGKFKFPSKSLLVESCSSHLSTLFSCINRKFGHWQAFLQDFFFLTSGISSFITCFPSICRAMVLIYNSVVFMDDICSVWQRNFNQWYKSDSLIILTKAKLKKFANAFAWPLFKLGKTASHGNEKDYCDILPSSDVPKIAQNVPEIVSSTRRKLLQSSGNNLAAVPFDDKTPIEFSTAPTTFSTGAIPAVPDATENQNQPAPSDPNAPDDASDENQSQDASDGNQESQDVNNGASVWKWIIIILLLLAIIIIILLYIWRKRAAKVIGPWKTGISGQLRKAFITGVPKLNRAELETACEDFSNIVIDSYAECTIYKGTLSSGVEIAVVSTLITSSKNWSKSMELRYRKKIDNLSRINHKNFINLIGYCEEEEPFTRMLVFEYAPNGNLFEHLHVSHLERIDWSARVKIIMGVAYCLQYMHHDLNPPMAQSKLDTNMIFLTDDFSAKIAEVTFRHIVTPESVGDSKKSDDGPSDENIETNVYQFGELLLEIISGKLPYSVEHGNLVDWAAKYLNEKTNLKDLVDPTLQCFKENELHCICDVIQDCMNPDVKSRPTMRDVTSKLREVLGLSPEQVVPRLSPLWWAELEILSVETT 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00786 756 FunFam Nuclear pore complex protein NUP107 30 170 - -
Vimu2g00786 756 MobiDBLite consensus disorder prediction 354 394 - -
Vimu2g00786 756 Gene3D Ribonuclease Inhibitor 32 189 IPR032675 -
Vimu2g00786 756 Pfam Protein tyrosine and serine/threonine kinase 476 725 IPR001245 GO:0004672|GO:0006468
Vimu2g00786 756 Gene3D Phosphorylase Kinase; domain 1 437 545 - -
Vimu2g00786 756 MobiDBLite consensus disorder prediction 350 394 - -
Vimu2g00786 756 Gene3D Transferase(Phosphotransferase) domain 1 546 733 - -
Vimu2g00786 756 SUPERFAMILY Protein kinase-like (PK-like) 474 725 IPR011009 -
Vimu2g00786 756 SUPERFAMILY L domain-like 29 168 - -
Vimu2g00786 756 FunFam Inactive receptor-like serine/threonine-protein kinase 436 545 - -
Vimu2g00786 756 ProSiteProfiles Protein kinase domain profile. 424 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00786 756 PANTHER PROTEIN MALE DISCOVERER 2 15 754 - -
Vimu2g00786 756 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00786 Vimu-Chr2 4814349 4819370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00786 404 728 Receptor kinase-like Gene Family AT5G56040 26.781 1.69e-32 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vimu2g00786 PK_Tyr_Ser-Thr 4.7e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00786 - - vun:114189247 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00786 2 4814349 4819370 Vimu2g00786 2 4814349 4819370 ECH