Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00784 ATGTCAGAAGGACGTGAGATTCATAACAACGAGGAAAGTTCATCAGGATGTTCCCAGAAGTGCTCTTCATTTGACTTGAATGCAGAAGCTTGCAGTGATGATAACACTAATGCAAACGAGAATAATATTGAGAAAGTCAACGACGAGGGAACTTCAGGAAATGGAAGTAGCATTTCAAGAGAAGGCAATGCCAGAAGAGGAACTGTGAGACAATATGTTAGATCCAAGATGCCTCGGCTTCGTTGGACTCCTGAACTTCATCATTCATTTGTTCATGTTGTTGAAAGACTTGGTGGTCAAGAGAGAGCAACACCCAAGTTGGTGCTTCAGCTAATGAATGTGCAAGGACTCAGCATTGCTCACGTCAAGAGCCACTTGCAGATGTATCGAAGCAAGAAACTTGACGAGGCTGGGCAAGTACTAAGTCAAACGTATAGGTGGAACCAAAACCAAAAGTTACGTAGATCTGTGATACTCCATGAGTCCATGAGTCCTCAACAACATCTTAAGATGGGGAATGGTGGAATCATTCTGGCAACTCAATTCAACAAACATTGTCATTTCCCAAGTCTCATGGACACCCCTTTTCCCCTGTCATCTTCCCATACAAATGACACTGATTCAAGGTAA 630 0.4286 MSEGREIHNNEESSSGCSQKCSSFDLNAEACSDDNTNANENNIEKVNDEGTSGNGSSISREGNARRGTVRQYVRSKMPRLRWTPELHHSFVHVVERLGGQERATPKLVLQLMNVQGLSIAHVKSHLQMYRSKKLDEAGQVLSQTYRWNQNQKLRRSVILHESMSPQQHLKMGNGGIILATQFNKHCHFPSLMDTPFPLSSSHTNDTDSR 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00784 209 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 45 167 IPR046955 GO:0003700
Vimu2g00784 209 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 134 IPR017930 -
Vimu2g00784 209 Gene3D - 77 135 - -
Vimu2g00784 209 MobiDBLite consensus disorder prediction 35 71 - -
Vimu2g00784 209 SUPERFAMILY Homeodomain-like 76 132 IPR009057 -
Vimu2g00784 209 MobiDBLite consensus disorder prediction 35 64 - -
Vimu2g00784 209 FunFam Myb family transcription factor 76 134 - -
Vimu2g00784 209 Pfam Myb-like DNA-binding domain 80 130 IPR001005 -
Vimu2g00784 209 NCBIfam myb-like DNA-binding domain, SHAQKYF class 78 133 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00784 Vimu-Chr2 4796305 4797553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00784 69 139 G2-like Transcription Factor Family AT2G42660 74.648 5.21e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu2g00784 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00784 - - vun:114187451 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00784 2 4796305 4797553 Vimu2g00784 2 4796305 4797553 ECH
Vimu2g00784 2 4796305 4797553 Vimu11g03725 11 59288308 59293010 ECH
Vimu11g03725 11 59288308 59293010 Vimu2g00784 2 4796305 4797553 PCT