Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00732 ATGGGTTCCAAAGACAAGCATGACGACGACGAATCGCTTAGTATAGGCCTAAAGGTGATGCTAGCAGCAGCTATCTCTTTATTTGCTGTGATCTCAATAATCATCATCGTCCATTTTAGTGTCAAATATTTCATCAGACGGCAACAAAGGAGACGCCAAAACGATCTTCTTCAGCAGATGACCACTCGGATTGCACCGATTGATGTGAGTTCTGTGGAGGCACGCAACCCTGGACTTCAAACTTCCATCGTAGCATCTCTGCCTAAACTTTTGTACAACCAAACGGAACAGTTCAAGCAAGGTGAAGTGATAGAGTGTTCGGTTTGCCTGGCTACCGTTATGGAGGATGCAATGACTAGAGTGCTACCAAATTGTAAGCACATTTTTCATGTTGATTGTGTTGATAAATGGTTTAATTCTAACACCACATGTCCAATTTGCCGCACCGTGGTTGACCCGAAGGTGTCACCGGAAGAAGAACATGTCCAACCCACAGCACCACCTGTGGAGACGGTGGGGTGTTCGGGTTTGAGAATAGGATCTTTCCATAGGATGGTTAGTAACAGGGAAAGATCAGGGAGGAGGAGTCACAGTTGTGATGAATCTACTATAGATATAGCAAGACACTGA 630 0.4492 MGSKDKHDDDESLSIGLKVMLAAAISLFAVISIIIIVHFSVKYFIRRQQRRRQNDLLQQMTTRIAPIDVSSVEARNPGLQTSIVASLPKLLYNQTEQFKQGEVIECSVCLATVMEDAMTRVLPNCKHIFHVDCVDKWFNSNTTCPICRTVVDPKVSPEEEHVQPTAPPVETVGCSGLRIGSFHRMVSNRERSGRRSHSCDESTIDIARH 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00732 209 MobiDBLite consensus disorder prediction 188 209 - -
Vimu2g00732 209 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 158 - -
Vimu2g00732 209 SMART FANCL_C_2 102 156 - -
Vimu2g00732 209 Pfam Ring finger domain 105 148 IPR001841 -
Vimu2g00732 209 SUPERFAMILY RING/U-box 92 156 - -
Vimu2g00732 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Vimu2g00732 209 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Vimu2g00732 209 SMART ring_2 106 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00732 Vimu-Chr2 4460420 4461049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00732 12 209 C3H Transcription Factor Family AT2G42360 31.839 5.80e-30 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00732 K19038 - gmx:100786701 293.123