Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00729 ATGAATTTTCATACCCAAACTTCCAAAGCGGTATCAAATGTTTTGCTTCGGCATTCTCTGACAATCTTTCTTCTCCTCATTGGAGCTCAGGTTGGCTACAGTTTCCAAAATACAATTGTTGGCGTGCTCATTCATGTCAATTCAAAGACAGGAGAACAACAGAGAATGGCCATGCAAATTGCAGCTCAACGTTACAACAATTATTCACAGAACCACTATATAAACCTTTTCTTCCGCGACTCTGGTGGAATTCCATTACAAGCAGCTTCATCTGCTGAAGAACTAATCATTAAGAAAAAAGTTGAAGTCATTCTTGTCATGGGGACATGGCAAGAAGCAACTCTAGTTGCTGACCAGGGAAACAGTGCTCAAATTCCAATTATTTCATTTTCTTCTCCCCCAATGATCCCTCCTGCTTCAGTGCAACATCGTTGGCCGTTTCTGATTCAAATGGCAAAAGATCAGGCTGTACAAATAAATTGCATTGCAGATATTATCAATGAGTTCAATTGGCGGAAGGTTATAGCTATATATGAAGACAACCCTTACAGTGGTGATTCTGGAATGTTAAGCCTCTTTTCTGAGGCTCTCCAAAAGGGTGACTCACAGATAGAGAACCGGTTAGTTCTTCCATCGTTCACATCTTTATCTGATCCGAAAGGATTTGTTCTGGACGAATTGCTTAAGCTTTTGCCACTGCAATCTCGTGTTTTTGTTGTACTTCAAGCAACATTCCCAATGATAACCCATTTATTCAGAGAAGCTAAGAAAATTGGATTGTTGGGGAAAGATTCAGCTTGGATAATGAACGAGGGGATCACAAGTATGTTAGACTTTGCAAACAAATCTGTTTTGTCCTCTATGGAAGGTGCTTTAGGAATCAAAACCTATTATTCTACAAGTTCTCTTTCTTATAGGCAATTGCAGGAAGATTTCCAAACTGAGCATGCAAAACCAGGATCAGATGCATTACAAGCTTATGATAGCGTTACATTAATCACAAAGGCCTTGGAGAGAATGAATGGGAAATCTAGTAATTCAAGGGTGTTCTTGGAAAAATTGTTATCTAGCGATTTCAATGGTTTAAGTGGTAATATAAGATTCAAAGATGGTCATCTATTCAATACTCCGGTGTTGAGAGTGATAAACGTGGTTAACAAGGAATACAAGGAACTAGATTTTTGGACCCCGAAATTGAAGTTCGGTAAATCTCTTAAAATACTAAAAGACAGAGAAACAAAAGATGATTATGCTACAAATATCTCGCTTGGTCCAGTGGTTTGGCCAGGAGGCCTAACTTCTGCAGGTCCAAAGGGATGGAAACTGCCGACTAACGCAGAACCTTTAAAAGTGGCAATTCCTATAAACCCTGCTTTTGAAAATTTTCTGAAGGAAGGCCCTCCAAAGAAATATGATGGTTTCTGTATTCGTCTTTTCTTTGAGACAATAAAAATTCTGAGTGACAAGTATGGTGACATTCCCTATGAATTTGAGTCCTTCAATGAATCCTATGATAAACTTCTACTGAAGGTAATAAACAAGTCCCACCATGCTATTGTCGGAGATTTAACAATACTCGCCAACCGATCAAAGGATGTGTCGTTCACTCAACCATACACTGATTCGAGCTTATCAGTTATATTTCCAATAGAGACTGAAGGATCGATGTGGTTGTTTATGAGACCCTTTCACTGGGGAATGTGGCTTGCTACTATTTGCATTCTCATCTACACAATGTTCACCGTATGGTTCCTGGAGCATGAGTTCAATCCAGATTTTGGTGGTCCATTGGAAAATCAGATCAGCACCACACTGTGGTTTGCCTTTTCTTCTCTATTTTTTGCTCATAGGGAGAGAATAAGAAGCAACTCTGCACGAGTAGCAGTTGCTGCATGGCTTTTTCTTGTGTTTGTTATAAACTCAAGCTACACTGCCAACCTTTCCTCAATGCTAACCGTCAAACGATGGTCACGAAGAGATATTGAGTGGCTAAAGCAAAACAAGTTATCAGTTGGTTGTGGAAACAGCAGTTCCTTTGTAAAGAACTACATGATACATGTGTATAAGTTCCATCCAAATCAAATAATAAACGTTCATGGAGAACATGACATTGTAGATAAATTCAAAAGCAAAAAAATGCATGCTCTCTTTTTTGAAAGCCCGTATGAGAGGGTTTTCTTGAACAAGTACCCCAGGGATTACACTGCAATTACAGCTGCCTATAAATTTGGAGGACTTGGCTTTGTATTTCAAAAAGGATCTCCCATGGCTGAAGATTTTTCTGAAGCCATTTTAGAACTAGAAGAAAATGGAAAACTAAAATCTTTGGAAGAGCAATGGTTGACTCCTCCCCAATGCTCAAACTCAAGCCGTTCTTCAGAAACTGAGGGCCTGACCCTCTCCAACTTCTGGATTCTCTATGTCATGTGTGCTTTCATGTGCACCATCTGCTTGGTGCTGTCTGTCAGCAGCCAAACATAA 2481 0.3954 MNFHTQTSKAVSNVLLRHSLTIFLLLIGAQVGYSFQNTIVGVLIHVNSKTGEQQRMAMQIAAQRYNNYSQNHYINLFFRDSGGIPLQAASSAEELIIKKKVEVILVMGTWQEATLVADQGNSAQIPIISFSSPPMIPPASVQHRWPFLIQMAKDQAVQINCIADIINEFNWRKVIAIYEDNPYSGDSGMLSLFSEALQKGDSQIENRLVLPSFTSLSDPKGFVLDELLKLLPLQSRVFVVLQATFPMITHLFREAKKIGLLGKDSAWIMNEGITSMLDFANKSVLSSMEGALGIKTYYSTSSLSYRQLQEDFQTEHAKPGSDALQAYDSVTLITKALERMNGKSSNSRVFLEKLLSSDFNGLSGNIRFKDGHLFNTPVLRVINVVNKEYKELDFWTPKLKFGKSLKILKDRETKDDYATNISLGPVVWPGGLTSAGPKGWKLPTNAEPLKVAIPINPAFENFLKEGPPKKYDGFCIRLFFETIKILSDKYGDIPYEFESFNESYDKLLLKVINKSHHAIVGDLTILANRSKDVSFTQPYTDSSLSVIFPIETEGSMWLFMRPFHWGMWLATICILIYTMFTVWFLEHEFNPDFGGPLENQISTTLWFAFSSLFFAHRERIRSNSARVAVAAWLFLVFVINSSYTANLSSMLTVKRWSRRDIEWLKQNKLSVGCGNSSSFVKNYMIHVYKFHPNQIINVHGEHDIVDKFKSKKMHALFFESPYERVFLNKYPRDYTAITAAYKFGGLGFVFQKGSPMAEDFSEAILELEENGKLKSLEEQWLTPPQCSNSSRSSETEGLTLSNFWILYVMCAFMCTICLVLSVSSQT 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00729 826 CDD PBP1_GABAb_receptor_plant 40 405 IPR044440 -
Vimu2g00729 826 Gene3D - 444 556 - -
Vimu2g00729 826 Pfam Ligand-gated ion channel 783 812 IPR001320 GO:0015276|GO:0016020
Vimu2g00729 826 Pfam Bacterial extracellular solute-binding proteins, family 3 492 782 IPR001638 -
Vimu2g00729 826 SUPERFAMILY Periplasmic binding protein-like II 424 783 - -
Vimu2g00729 826 PIRSF IGluLR_plant 9 825 IPR017103 -
Vimu2g00729 826 FunFam Glutamate receptor 556 685 - -
Vimu2g00729 826 Gene3D - 721 788 - -
Vimu2g00729 826 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 41 821 IPR015683 -
Vimu2g00729 826 FunFam Glutamate receptor 158 323 - -
Vimu2g00729 826 Gene3D - 557 695 - -
Vimu2g00729 826 Pfam Receptor family ligand binding region 55 384 IPR001828 -
Vimu2g00729 826 SMART GluR_14 450 783 IPR001320 GO:0015276|GO:0016020
Vimu2g00729 826 Gene3D - 38 158 - -
Vimu2g00729 826 SUPERFAMILY Periplasmic binding protein-like I 39 439 IPR028082 -
Vimu2g00729 826 Gene3D - 159 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00729 Vimu-Chr2 4435444 4438712 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00729 40 824 Ion Channels AT2G29120 31.356 2.40e-123 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00729 - - vun:114188616 1419.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00729 2 4435444 4438712 Vimu2g00729 2 4435444 4438712 ECH