Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00728 ATGCATTTCCTTTCAACTAATCCTCAAGCAATCACAACGAATTTTCTCTTCTTTTATGTACTCATCTCCCTTGTTCTTATTAATGGCTACCAAGATGAAGCTACAAATATAGACAACCAAGTTATATCCGTTGGGGCAATCATTGATGTGAATTCTCGCATTGGGAAAGAACAGCAAATAGCCATGGACATTGCAGCTCGAAGTTACAATAGCACTTCAAAGACCTACAAGTTGGCTCTCTATTTTCGGAACTCCACCGAGAATCCTCTTAAAGCCATCACTCTTGCTGAAGAGATGATTGATAAGCAAAAGGTGGAAGTGATTATCGGGATGCACAGATGGTCAGAAGCAGCTCTAGTGGCTGAAATAGGAAGCCAAGCTCAAGTTCCTATTATAGCATTTGCAGAACCCACCGTTACCCCGCCGTTGATGAGTAATAGGTGGCCTTTTCTGGTGAGAATGACTAGGAGTGATTTATCATATATCAAATGCATTGTAGATATAGTGAAAGCTTTTGGTTGGCAGAGAGTAGTTGCTATCTATGAAGATGATGCATATGGAGGTGACTATGGCATGCTAGCACTGCTATCTGAGGCCCTCCGGGATGTGAGTTCATCGATTGATTATCACTTAGTTCTTCCACCTATTTCTTCTCTGCATGAACCAGGAGGGTTTATACATGAAAAACTGTTGAAGTTGTTGCAGACCCAATCTCGCGTTTTCATTGTGCTGCGATCTTCATTAGAAATGGCTATCCATTTGTTTAAAGAAGCCTCAAAAATGGGATTCGTGGACAAAGAATCAGCATGGATACTTCCAGAGAGCATAACAAATGTGCTGGACTCTGTCAACAAGTCCGCTATGTCCTATATGGATGGGGCTTTAGGAATCAAAACGTACTACTCCGAAATAAGCACTGAGTACCAAGATTTTGAGGCTGAATTCCGGAGAACATTTTGGTCCAAGAATGTTGAGGAAGATAACCGCTACCCCGGATTTTATGCATTGCAAGCATATGATAGCATTAAAATTGTGACCCAAGCAGTAGACAGAATGACCAATAGAAACACTAGGAGCCTAAAGAATTTACTTGGAGAAATACTGCGTAGCAGTTTTCTTGGTTTAAGCGGTCGTATTCAATTCGAAGATGGGAAACTCCAGCAGACTTCTATTTTAAGGATGGTAAATGTGGCTGGGAAGAGTTACAAGGAACTATGCTTTTGGAGTGAACAATATGGGTTCACCAAAAACCTCTCTACAGGAAAAGGTGGACATTATGGCGCTGGTAATACAGAATGTTTCAGTGCTGTTCGGTGGCCTGGGAATCTGAAAAGGGATCCAAAAGGCTGGAATATGCCTACTAAACAAAATCGTATGAAAATTGCAGTCCGAAGCAGAACCTCTTTTTCCAAGTTTGTCAAGGTTGATTATGATCATGCGGGCGATCCTGCAAAATATAGTGGATTTTGTATCGATATTTTTAAGGGTGTGCTCGACCTTTTGGGGTATGACTTGCCATACGATTATTATCCTATTGATGGAACCTATAATGATTTGGTTCAGCTTGTCTATAACAAGAGTTATGATGCCGTAGTTGGGGACATGACCATACTAGAAGAAAGAATGCAGTATGTGGATTTTACAGTGCCATATGCAGAATCAGGATTGACAATGGTAGTTCCATCAAAGTCTAAAGAGTCGGCATGGATGTTCACAAAGCCCTTTACCTGGGAAATGTGGATGGTTACGGGTGCCATCTTGATTTACACAATGTTAGCAGTTTGGTACCTTGAGAAGGAATCCAATCCCGAGTTTCATGGCAATTGGGGCAGCCAAATCAGCACAGCTCTTTGGTTTACCTTCTCCTCTTTGTTTTTCGCTCACAGGGAAAAAATGCAGAGCAACTTAACTCGCATCGTGATGGTCTCATGGCTCTTGCTAGTTCTGATCCTTAACTCATCCTACACTGCTAACCTTTCTTCAATGCTCACGGTTAAGCAACTGGAATTGAATGTCCCAGATATTCAGTTCTTGAAGAGGAACAGCAAGACAATTGGTTGCGATGGTGACTCATTTGTTAGGTCGTTCCTAGAGAAAGTAGAAGGGTTCCCGCCTGGGAACATAAAAAGTATCACTGATGAATACACGTATGATGATTTTTTTCAAAATAGCAGCATAGCAGCTGCCTTTCTTGAACTCCCATACGAAAAGGTATTCATCACTGAATACTGTAACAAATACACCGGCTCCACTCCCAGAACCAGATTTGGAGGACTGGGCTTTATGTTCCAGAAAGGGTCGCCAGTGGCCAGAGACGTGTCAAAAGCTATATTACATATGTCAGAGAATGCAGAGCTGAAGAGGTTGGAGGAGAAGTGGTTGATTAGTTCCGGCAAGTGCTCCAACACGACCTCCGACACCAACAATAGGGATAGTTTGAAGCTGAGAAGTTTATGGATTTTATATGTCATCTCTGGTGCTACTTCCACCATTTGTCTGCTACTATCAACCATCCAATCTCTTGTAAAATCCTGTCAGCAACGCCAACGCGTGGCACCAGAAGGCAATGACACCCCAAATTATCAAAATGCGTGGGAAAAGGTGATTGCACATGTAAAGCAGATTTACAACAAAAAGATCAATAATTCAAGAGAGACACGGACACAGGTTGTTACTGATTTTCTTCCAGACAGGGTCACGAGAGCATGA 2709 0.4208 MHFLSTNPQAITTNFLFFYVLISLVLINGYQDEATNIDNQVISVGAIIDVNSRIGKEQQIAMDIAARSYNSTSKTYKLALYFRNSTENPLKAITLAEEMIDKQKVEVIIGMHRWSEAALVAEIGSQAQVPIIAFAEPTVTPPLMSNRWPFLVRMTRSDLSYIKCIVDIVKAFGWQRVVAIYEDDAYGGDYGMLALLSEALRDVSSSIDYHLVLPPISSLHEPGGFIHEKLLKLLQTQSRVFIVLRSSLEMAIHLFKEASKMGFVDKESAWILPESITNVLDSVNKSAMSYMDGALGIKTYYSEISTEYQDFEAEFRRTFWSKNVEEDNRYPGFYALQAYDSIKIVTQAVDRMTNRNTRSLKNLLGEILRSSFLGLSGRIQFEDGKLQQTSILRMVNVAGKSYKELCFWSEQYGFTKNLSTGKGGHYGAGNTECFSAVRWPGNLKRDPKGWNMPTKQNRMKIAVRSRTSFSKFVKVDYDHAGDPAKYSGFCIDIFKGVLDLLGYDLPYDYYPIDGTYNDLVQLVYNKSYDAVVGDMTILEERMQYVDFTVPYAESGLTMVVPSKSKESAWMFTKPFTWEMWMVTGAILIYTMLAVWYLEKESNPEFHGNWGSQISTALWFTFSSLFFAHREKMQSNLTRIVMVSWLLLVLILNSSYTANLSSMLTVKQLELNVPDIQFLKRNSKTIGCDGDSFVRSFLEKVEGFPPGNIKSITDEYTYDDFFQNSSIAAAFLELPYEKVFITEYCNKYTGSTPRTRFGGLGFMFQKGSPVARDVSKAILHMSENAELKRLEEKWLISSGKCSNTTSDTNNRDSLKLRSLWILYVISGATSTICLLLSTIQSLVKSCQQRQRVAPEGNDTPNYQNAWEKVIAHVKQIYNKKINNSRETRTQVVTDFLPDRVTRA 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00728 902 PIRSF IGluLR_plant 9 897 IPR017103 -
Vimu2g00728 902 Gene3D - 737 801 - -
Vimu2g00728 902 Gene3D - 568 697 - -
Vimu2g00728 902 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 871 IPR015683 -
Vimu2g00728 902 Pfam Ligand-gated ion channel 795 826 IPR001320 GO:0015276|GO:0016020
Vimu2g00728 902 CDD PBP1_GABAb_receptor_plant 43 418 IPR044440 -
Vimu2g00728 902 Pfam Receptor family ligand binding region 59 387 IPR001828 -
Vimu2g00728 902 SMART GluR_14 460 796 IPR001320 GO:0015276|GO:0016020
Vimu2g00728 902 Gene3D - 47 389 - -
Vimu2g00728 902 Pfam Bacterial extracellular solute-binding proteins, family 3 483 794 IPR001638 -
Vimu2g00728 902 Gene3D - 157 411 - -
Vimu2g00728 902 SUPERFAMILY Periplasmic binding protein-like I 39 450 IPR028082 -
Vimu2g00728 902 FunFam Glutamate receptor 568 698 - -
Vimu2g00728 902 SUPERFAMILY Periplasmic binding protein-like II 435 794 - -
Vimu2g00728 902 FunFam Glutamate receptor 161 329 - -
Vimu2g00728 902 FunFam Glutamate receptor 458 569 - -
Vimu2g00728 902 CDD GluR_Plant 457 794 - -
Vimu2g00728 902 Gene3D - 459 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00728 Vimu-Chr2 4428807 4432983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00728 7 835 Ion Channels AT2G29120 32.636 1.56e-144 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00728 - - gmx:100818619 1419.83