Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00723 ATGGTGTTGAAAATCCTGAAGTCCTCCTTCAAAATAGCTGGTAAATGCATTAATGCTCAAGTTTTCCAATTGGGTTTCCATTCATTTATCGTATTAAAGCAATTAAGCAAATCTGATGAGCTGTCAAACAGGTTTTTCGCATTGCATGTTTTGCTCTATATATCTTCACCCATAATATCACACACCCCCTTCATTACCAACATGGATATTCATAGTAATCACGGTGCAACTTCTGAAGGGATTCTTGAGGATGTGTGGGCCAAAATTATGAGCAGCGATAAAGCAGATGGAAGAAAAGGTGACGCTACAGAGTCTTGTAACTCTTGGGAAGAACTTCCTCACCTTGATGGAAGAGAAGGGTCCATGGAAATTCTACAAAGACTTCCAAGTTTAGGGAGGTGGATATCAATGGGAGCTGATTTCTGGGAAGAAGTTTTAGATGGTATTGTTCTACCTAACACAAGCAATAGCAATAACAACATTGAAATTGGAAGTGCTGGTGAATGTAATAAAAAGGTGGAAGGTGGTGTGAGAATGGAGAAGGAAGTTAGAAAACACTACAGAGGAGTTAGGAGAAGGCCTTGGGGTAAATATGCTGCAGAGATTAGAGACTCATCGAAGAAAGGTGCAAGAGTTTGGCTTGGAACATTTGAAACAGCTGAAGAAGCTGCTTTGGCTTATGACAAGGCCGCTTTGAGGATTAGGGGTCCAAAGGCATACCTTAATTTCCCACTTGAGAGGGTTGCAATGGCTTTAGGATGTGACAACAAGGAAAATTTGATCAAGTCTAGGAAGAGGGGATCAAGGGAAATGGAAATGTTTGATGATTATACGATGAATGAAGAACCTGCAAGAAAAAAGTTGGAATGCATGGTAGAAAATGAACTTGGTGTTTTTGTATTTCAGGATCTAGGAAGTGATTACTTGGACAGTTTGCTGTCCTCTTTTTGA 951 0.4006 MVLKILKSSFKIAGKCINAQVFQLGFHSFIVLKQLSKSDELSNRFFALHVLLYISSPIISHTPFITNMDIHSNHGATSEGILEDVWAKIMSSDKADGRKGDATESCNSWEELPHLDGREGSMEILQRLPSLGRWISMGADFWEEVLDGIVLPNTSNSNNNIEIGSAGECNKKVEGGVRMEKEVRKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFETAEEAALAYDKAALRIRGPKAYLNFPLERVAMALGCDNKENLIKSRKRGSREMEMFDDYTMNEEPARKKLECMVENELGVFVFQDLGSDYLDSLLSSF 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00723 316 SMART rav1_2 186 250 IPR001471 GO:0003700|GO:0006355
Vimu2g00723 316 PRINTS Ethylene responsive element binding protein signature 210 226 IPR001471 GO:0003700|GO:0006355
Vimu2g00723 316 PRINTS Ethylene responsive element binding protein signature 187 198 IPR001471 GO:0003700|GO:0006355
Vimu2g00723 316 Pfam AP2 domain 186 236 IPR001471 GO:0003700|GO:0006355
Vimu2g00723 316 SUPERFAMILY DNA-binding domain 186 245 IPR016177 GO:0003677
Vimu2g00723 316 CDD AP2 185 244 IPR001471 GO:0003700|GO:0006355
Vimu2g00723 316 ProSiteProfiles AP2/ERF domain profile. 186 244 IPR001471 GO:0003700|GO:0006355
Vimu2g00723 316 Gene3D AP2/ERF domain 185 246 IPR036955 GO:0003700|GO:0006355
Vimu2g00723 316 PANTHER DNA-BINDING DOMAIN 169 265 IPR044808 GO:0003700|GO:0009873
Vimu2g00723 316 FunFam Ethylene-responsive transcription factor 2 185 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00723 Vimu-Chr2 4402088 4403038 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00723 81 262 AP2-EREBP Transcription Factor Family AT4G18450 46.524 1.51e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu2g00723 AP2 2.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00723 - - gmx:112999553 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00723 2 4402088 4403038 Vimu2g00723 2 4402088 4403038 ECH