Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00722 ATGGGAACCAACAAAAACTACGACGAACAAACCACCCTCTCCTTTTCTCAATTCCAAACAGAGTTCTTACCCTTCAACGAGAACGACCCTCAGGACATGGTCATATACCAAGTTCTCAACGAGGCCAATGCTCTCTCCAACACATTCCACCCTCACCAAAGACTCCACCAGCCGCAATTCGCCCTCGACCCCACCAGAAACATCGCCAAAAAACACTACAGAGGAGTTCGCCGCCGACCCTGGGGGAAGTACGCCGCCGAGATTCGGGACTCCGCACGCCACGGCGCCAGAATATGGCTCGGCACTTTCCAGACCGCCGAAGAGGCCGCCATGGCTTACGACCGCGCCGCCTTCAAGATGAGAGGCGCCAAGGCTTTACTCAATTTCCCAGCCGAAATCGTGGCTGCGGCCTCAGATTCATCGTTCAATAATAATAATAATAATAAGAAGAAGAAGAAGAACAACAACGATGCTGTTTCTGATTGTAGTGGTGGAAGCTCTTGCATCACCAATAATTCCACTCAGGTAAATGGGTCTCGATCAGAAAGCACAAGTAGCACTAGTTAG 567 0.5079 MGTNKNYDEQTTLSFSQFQTEFLPFNENDPQDMVIYQVLNEANALSNTFHPHQRLHQPQFALDPTRNIAKKHYRGVRRRPWGKYAAEIRDSARHGARIWLGTFQTAEEAAMAYDRAAFKMRGAKALLNFPAEIVAAASDSSFNNNNNNKKKKKNNNDAVSDCSGGSSCITNNSTQVNGSRSESTSSTS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00722 188 MobiDBLite consensus disorder prediction 158 188 - -
Vimu2g00722 188 Gene3D AP2/ERF domain 71 132 IPR036955 GO:0003700|GO:0006355
Vimu2g00722 188 CDD AP2 71 131 IPR001471 GO:0003700|GO:0006355
Vimu2g00722 188 SMART rav1_2 72 136 IPR001471 GO:0003700|GO:0006355
Vimu2g00722 188 FunFam Ethylene-responsive transcription factor 2 71 132 - -
Vimu2g00722 188 MobiDBLite consensus disorder prediction 140 188 - -
Vimu2g00722 188 PANTHER DNA-BINDING DOMAIN 55 163 IPR044808 GO:0003700|GO:0009873
Vimu2g00722 188 Pfam AP2 domain 72 122 IPR001471 GO:0003700|GO:0006355
Vimu2g00722 188 SUPERFAMILY DNA-binding domain 72 132 IPR016177 GO:0003677
Vimu2g00722 188 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Vimu2g00722 188 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Vimu2g00722 188 ProSiteProfiles AP2/ERF domain profile. 72 130 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00722 Vimu-Chr2 4399394 4399960 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00722 14 133 AP2-EREBP Transcription Factor Family AT4G17500 44.444 3.54e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu2g00722 AP2 6.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00722 K13433 - gmx:100811533 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00722 2 4399394 4399960 Vimu2g00722 2 4399394 4399960 ECH