Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00721 ATGCGTTTTATTTCCCCTCTTCGTTTTGTTTGTTTCTTTACCACTACAGGTACCGGTTGTGAAGAGAGAAGTCCGGAGCCAAAGCCAAGGTGGAATCCAAAACCTGAGCAAATTCGCATTCTGGAAGCTATATTCAACTCTGGAATGGTGAATCCTCCGAGGGATGAGATAAGAAAGATAAGGGCACAGTTACAAGAGTATGGCCAAGTGGGTGATGCAAACGTATTCTATTGGTTTCAGAACCGCAAATCAAGGAGCAAACACAAGCTTCGCCATCTCCAAAACACGAAAAACCAGAACCTTGAAGCTCAACAAAACCCCACATCTCTCCCTCAAATCACTGCACCATCGTCCTCGTCTTCCTCCTCTGAGAAATCCTCTCCAAAAGAATTATTACCTACCAAGGTATTTTCCATCGGATTCTCTAACGTCACCGATGTGGTACCTAATTCTCCGACTACTTCTGTGAACCAGTCCTATTTTCAGACTCACAACGAGTCTTCTATGCTTCCACCCCCACCACCTGCTGCTGCTGCCGCCGCACAAACTGGGGGTTTCTTCTTCCCAGTGCAACATCATGGGCAGGGAGTACCACCTAGTACGGTGGCATCTCAAGGGTTTTGCTTCTCGGAGCTGTCCAATGTTGTTCAACTTCAATCACCTCCTCAACACAACGTTGGACCTTGCACCAGTCTCTTGCTCAGCGAAATCGTAGGCCATGGTGCTGCTGCTTCAAAGAAAGATCTGGAGCAAGACAAGAGTCTGAAAATAATGCACCAGCCCTCACTGTTTAATTTCTGTGTCACTCCCACAACAACAGCTCCTACTACTGCCTCTGCTGTACCTCCCATCACTACCTCAACCACCACTGTTCTATCCCCCGTCATTGCTCAAGTTCAAGGCATGGGAGATCCAGCTGCTGCGGCGAGATCAACGGTGTTCATTAACGATGTGGCATTCGAGGTAGCGGTGGGTCCTTTCAATGTGCGTGAAGCTTTTGGAGATGATGCTGTGCTCATCCACGCCACTGGTCAACCTGTGCTAACAAACCAATGGGGTGTCACTCTTCATTCACTCCAGCATGGTGCATGTTATTATTTGGTGCGAACATTAGACCTGCTACTGTTGCAATAA 1134 0.478 MRFISPLRFVCFFTTTGTGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNTKNQNLEAQQNPTSLPQITAPSSSSSSSEKSSPKELLPTKVFSIGFSNVTDVVPNSPTTSVNQSYFQTHNESSMLPPPPPAAAAAAQTGGFFFPVQHHGQGVPPSTVASQGFCFSELSNVVQLQSPPQHNVGPCTSLLLSEIVGHGAAASKKDLEQDKSLKIMHQPSLFNFCVTPTTTAPTTASAVPPITTSTTTVLSPVIAQVQGMGDPAAAARSTVFINDVAFEVAVGPFNVREAFGDDAVLIHATGQPVLTNQWGVTLHSLQHGACYYLVRTLDLLLLQ 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00721 377 SUPERFAMILY Homeodomain-like 24 93 IPR009057 -
Vimu2g00721 377 Gene3D - 28 94 - -
Vimu2g00721 377 SMART HOX_1 26 93 IPR001356 GO:0003677
Vimu2g00721 377 Pfam Homeodomain 28 88 IPR001356 GO:0003677
Vimu2g00721 377 ProSiteProfiles 'Homeobox' domain profile. 24 89 IPR001356 GO:0003677
Vimu2g00721 377 FunFam WUSCHEL-related homeobox 11 28 95 - -
Vimu2g00721 377 CDD homeodomain 27 89 IPR001356 GO:0003677
Vimu2g00721 377 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Vimu2g00721 377 MobiDBLite consensus disorder prediction 98 129 - -
Vimu2g00721 377 PANTHER WUSCHEL-RELATED HOMEOBOX 9 17 369 IPR044557 GO:0003700|GO:0050793
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00721 Vimu-Chr2 4386826 4388549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00721 18 368 Wox Gene Family AT2G33880 43.832 1.10e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vimu2g00721 Homeodomain 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00721 - - pvu:PHAVU_006G179900g 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00721 2 4386826 4388549 Vimu2g00721 2 4386826 4388549 ECH