Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00718 ATGGCTGTAGATTCTGCACTAAATTCCCTTACACAATCCTGGAGTAACAAGCCACAAAGTTGGGTGGGTCAAGATCCTTGCAGTAGCTGGGATGGAATTCGTTGCAGCGATACAAGAATTACCCAATTGTCAGTTCTTGGGAGAGTTCCAGGCTTGAATATTGGTGGCCAACTGTCTTCGGCAATTGAGTCTTTATCTGAACTAGATACTCTGTGCGGATCTTTCTTACAACACGGGTTTGACGGGAACAATTCCAGAAGAAATGGGGAATATGAAAAAGCTAAAATCCCTATCATTGGTTGGTTGTGGTTTCTCTGGTCCGATTCCGGATTCAATAGGATCTCTAACGCAGCTGACCTTTCTGTGTGCAGCCTTGATATATTCCTAAAAGTATCCAACTTTGTCTCGAAGGCATTGAACTCTAACAGGTTCAGTGGAAATATACCACGCTCTCTAGGCAATCTAACAAATATCAATTGGCTTGATCTTGCTGAAAACGAGCTTGAAGGGACTATCCCTGTCTCTGATGACCAAGGACGACCAGGCCTTGACCTGCTCCTTAAGGCACAACACTTTCATATGGGGAGCAATAAGCTCTCCGGTACAATACCAGAAAAACTTTTCAACTCCAGTATGATTCTGGAACACGTGCTTTTTGACCACAATCAACTGGAGGGCAGTGTTCCTAGTTCCATTAGTTCTGTGGGGACATTGGAAGTTCTGCGCTTAGACAAGAATGGATTAACAGGGGGCGTGCCGGCAAACTTAAACAGACTCGGAAAACTAAGCGAAATGGACATGAGCGACAATGCTTTCAATGCCTCTAATGTACCTTCATGGGTTTCAAGTCTGCCAGAACTGACAACAGTGTATGTTGAAACTTGGGCAGAACCAGCTCGGTGGCATCCTAAATCTCAACTAGCTAACAACCCAGTTTGTCGTGAAAGTGGATCTTCTGAAAATAGTTACTGCCAAGAAGCAGTACCAAATCCCTCGTTTTATTCAACACCATCGAATAACTGTTCTCCTCCACCTTGCAGTTCTGATCAGATTGCCAGCCCAAATTGTATATGTGCATATCCCTATACTGGACTTCTTATATCGAGAGCTCTTAGTTTCTCAAACTTCAGTGACGCAAGTTACTATAGGGAGCTTGAGCAGTCTCTGATGGATACTTTCCGAAACCAAAGCATTCCAGTGGATTCAGTTGCTCTTAGTAACCCCATGAGAAATTCTACTTCTGATAACTTTGAAGTGACTCTTCAATGCTTCCCCTCGCAAAGCGATCGTTTCAATTCAACTGGAGTTTTAAACATTGCTTTTCTGCTTAGTAACCAAATTTATAAGCCCCCAGAGTTCTTCTCCCCATACATCTTCAAGGGTGCTAATTATGATTACACAGGAGGAGAACCAAAATCATCGAAGTCATCACATACCGGGGTTATAGTTGGTGCTGTAGTTGCTGTTGTGGTCTTTATTGTACTGGCATCCCTTGCAGGGATGTATGCCATTCGCCAGAAAAGAAGAGCAGAAAGATCTGCAGGGTTGAACCCTTTTGCTAATTGGGAACAGAATAAGAATAGTGGCACTGCTCCTCAGTTGAAAGGAGGACGATGGTTTGCTTTTGATGACCTAAGGAAGTACACCAACAACTTCTCAGAAACCAATACTATTGGATCTGGAGGCTATGGACAGGTTTACCAAGGAACTCTTCCCTCTGGAGAGTTGGTTGCTATCAAACGGGCTGCAAAAGAATCTATGCAGGGTGCTGTTGAGTTTAAAACCGAGATTGAACTTCTATCAAGGGTCCATCACAAGAATCTCAAGGGTGAACAAATGCTGGTGTATGAGTACATTCCCAATGGCACTTTAATGGATAGTCTCTCAGGAAAGTCTGGGATCTGGATGGATTGGATAAGGAGACTTAAAGTAGCATTAGGCGCAGCCAGGGGTCTGGCTTATCTTCATGAACTTGCTAACCCACCAATCATACACAGGGACATCAAATCTAGCAATATCTTACTTGATCATCACCTCAATGCAAAAGTTGCTGATTTTGGTCTCTCCAAACTTCTTGTTGATAGTGAAAGGGGCCATGTTACTACTCAAGTCAAAGGGACAATGGGATACTTGGATCCTGAATATTACATGACCCAGCAGTTGACAGAAAAGAGTGATGTTTATAGCTATGGAGTGCTAATGCTGGAACTAGCAACAGCAAGAAGGCCAATAGAGCAAGGAAAGTATATTGTAAGAGAAGTAATGAGGGTAATGGACACTTCAAAAGATTTATACAACCTTCATTCCATTCTAGATCCAACCATAATGAAAACAAAACCAAAAGGTTTAGAAAAGTTTGTGATGTTGGCAATGAGGTGTGTCAAAGAATATGCAGCTGAGAGGCCTACAATGGCTGAGGTTGTAAAAGAGATTGAGAGCATAATCGAGCTTGTTGGATTGAACCCGAATTCTGAATCAGCTACAACATCAGAAACTTACGAGGAAGCAGGTGGAGGAAATGCCCAACATCCTTACAGGGAAGAAGATTTTAGCTATAGTGGAATGTTTCCATCAACAAGAGTAGAACCTCAATAG 2595 0.4274 MAVDSALNSLTQSWSNKPQSWVGQDPCSSWDGIRCSDTRITQLSVLGRVPGLNIGGQLSSAIESLSELDTLCGSFLQHGFDGNNSRRNGEYEKAKIPIIGWLWFLWSDSGFNRISNAADLSVCSLDIFLKVSNFVSKALNSNRFSGNIPRSLGNLTNINWLDLAENELEGTIPVSDDQGRPGLDLLLKAQHFHMGSNKLSGTIPEKLFNSSMILEHVLFDHNQLEGSVPSSISSVGTLEVLRLDKNGLTGGVPANLNRLGKLSEMDMSDNAFNASNVPSWVSSLPELTTVYVETWAEPARWHPKSQLANNPVCRESGSSENSYCQEAVPNPSFYSTPSNNCSPPPCSSDQIASPNCICAYPYTGLLISRALSFSNFSDASYYRELEQSLMDTFRNQSIPVDSVALSNPMRNSTSDNFEVTLQCFPSQSDRFNSTGVLNIAFLLSNQIYKPPEFFSPYIFKGANYDYTGGEPKSSKSSHTGVIVGAVVAVVVFIVLASLAGMYAIRQKRRAERSAGLNPFANWEQNKNSGTAPQLKGGRWFAFDDLRKYTNNFSETNTIGSGGYGQVYQGTLPSGELVAIKRAAKESMQGAVEFKTEIELLSRVHHKNLKGEQMLVYEYIPNGTLMDSLSGKSGIWMDWIRRLKVALGAARGLAYLHELANPPIIHRDIKSSNILLDHHLNAKVADFGLSKLLVDSERGHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSYGVLMLELATARRPIEQGKYIVREVMRVMDTSKDLYNLHSILDPTIMKTKPKGLEKFVMLAMRCVKEYAAERPTMAEVVKEIESIIELVGLNPNSESATTSETYEEAGGGNAQHPYREEDFSYSGMFPSTRVEPQ 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00718 864 SMART serkin_6 552 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00718 864 ProSitePatterns Serine/Threonine protein kinases active-site signature. 663 675 IPR008271 GO:0004672|GO:0006468
Vimu2g00718 864 SUPERFAMILY Protein kinase-like (PK-like) 538 822 IPR011009 -
Vimu2g00718 864 PANTHER RECEPTOR-LIKE PROTEIN 55 9 814 - -
Vimu2g00718 864 ProSitePatterns Protein kinases ATP-binding region signature. 558 584 IPR017441 GO:0005524
Vimu2g00718 864 CDD STKc_IRAK 558 814 - -
Vimu2g00718 864 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 619 827 - -
Vimu2g00718 864 SUPERFAMILY L domain-like 7 292 - -
Vimu2g00718 864 Gene3D Transferase(Phosphotransferase) domain 1 619 831 - -
Vimu2g00718 864 FunFam Leucine-rich repeat protein kinase family protein 179 279 - -
Vimu2g00718 864 ProSiteProfiles Protein kinase domain profile. 552 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00718 864 Gene3D Phosphorylase Kinase; domain 1 522 618 - -
Vimu2g00718 864 Pfam Protein kinase domain 553 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00718 864 MobiDBLite consensus disorder prediction 823 864 - -
Vimu2g00718 864 Gene3D Ribonuclease Inhibitor 3 180 IPR032675 -
Vimu2g00718 864 Gene3D Ribonuclease Inhibitor 190 288 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00718 Vimu-Chr2 4369990 4375910 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00718 5 864 Receptor kinase-like Gene Family AT5G49760 47.208 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vimu2g00718 Pkinase 9.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00718 - - gmx:100786172 1302.73