Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00707 ATGGGGTTGATCGATCTGAACACCACCGAGGATGATGAAGCTCCATTATCCGCTTCTTCTACTTCTGCCGCTTCATCTTCTTCTTCTCACTCTGGGATAAGCACTTCTGCTTCCACCTTCGTTGGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCCGTTTGCTTGGAACTCTGGCACGCCTGTGCGGGCCCTTTGATCTCTCTGCCGAAGAAAGGAAGTGTTGTTGTCTACTTGCCACAGGGACACTTTGAGCATGTTCAGGATTTTCCGGTCACTGCCTATGATATCCCACCCCATGTCTTCTGTCGTGTTCTTGATGTCAAGCTCCATGCAGAAGAAGGGAGCGATGAAGTATATTGCCAAGTGTTGTTGGTTCCTGAAAGTGAGCAAGTGGAGCAAAGTTTGCGTGAAGGCCAAATTGAAGCTGACGGGGAAGAGGAGGACACTGAAGCTACGGTGAAGTCAACAACTCCCCATATGTTCTGCAAGACTCTCACAGCTTCAGACACCAGCACTCATGGTGGATTTTCAGTGCCTCGCCGAGCGGCTGAAGATTGCTTTCCTCCTCTGGATTACAGTCAACAGAGACCTTCACAGGAGCTTGTGGCTAAGGATCTTCACGGCCTGGAATGGAGGTTTCGTCATATATACAGAGGCCAGCCACGGAGGCATTTGCTAACTACTGGATGGAGTGCATTTGTGAACAAAAAGAAGCTTGTTTCTGGAGATGCTGTGTTGTTTCTTAGGGGCGACGATGGAGAACTGAGATTAGGGATTCGTAGGGCAGCCCAGTTGAAAGGTTCTGGTTCCTTTGCAGTTCCCACTGGTCAGCAATTGAATCCTGGAACTTTCATGGATGTTGTTAATGCATTATCTACAAGATGTGCTTTTAGTGTTTGCTACAATCCAAGGTTTAGCTCTTCAGAATTCATCATACCTGTTCACAAATTCTTAAAGAGTCTTGATTGTTCTTATTTAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACAGAAGATGCTGCAGAGCGGAGGTTTACTGGATTAATTGCTGGAATCAGTGACGTAGATCCTGTTAGATGGCCTGGATCGAAATGGAGATGCCTACTGGTAAGGTGGGATGACATGGAAGCTGCTAGGCACAATAGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTGCTTCAAGTTCCAGCAACATGATGGCAGCTGGTTTGAAGAGGACCAGGATTGGAATGACTTCAACGAAGATGGAATTTCCTTCTCCCAATGGGATTGGAACATCAGACTTTGGGGAATCATTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATCCTCCCTTTGATGGTATTAATGCTCAGAGTCCCCGGTTGTATGACTTAGGGAGGTACTATATTGGTCCAAACTGTCCTGGGATTCCTCCAACGGGAAATAACATCAGAATGCAGCATGCAGCATCTGATTTTTCCTGCAATGGCACAGGCTTTAGTGAATCTTTCCGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTCTTCCAAGTCAACCATATGGAAGAGCATTGTCAATAGAGGAGGCTCGAGCTAATGGTCGCTTGGGACATTTTGATGGTTATCAGTTGCTTAACTCCAGAAATGGGTGGTCTGTACAGATGCATGACAACGCTCCGCATTTGCATGCATCCGTTACACCTTCACAGGTGTCATCTCCATCATCTGTGTTAATGTTCCAGCAAGCAGTTAATCCAGTTTCTAACAGTGATTATAATAATAAAAAACACAGTAAGATGTACCAAGGTTTATGCGCATCTGAAGTGAAAGCTAGAACATTTGCTTCTCCCCCATCTGATGATCTTACTTTCTCCAGGCGAGCTCCGGAAAGGGCTAGTTCTTTAGGTATGTTTGACGTTCGTAATCAGTTGGGTAGTTCACAGTCACACAATTCTGTGTCGGCACTGAGAAACAATCAAGAGTTGGTTTCCTCATGTAAAAGTAGTTGTAGACTCTTTGGTTTTTCATTGACTGAGGACACACATGTTGCAACCAAAGAGGTTGATGCCTCTACCATCACTTTACCCATTAATGCTGGACCTTCCTTTACTAGAATTGTTGAAGATGAGTTTCATCCTAGCAGGACACTCCAGAGCAAGGCGGTTGGAAGTAACTGCACAAAGGTATCTTATCTATGA 2205 0.4562 MGLIDLNTTEDDEAPLSASSTSAASSSSSHSGISTSASTFVGPPPPPPPPPPSSVCLELWHACAGPLISLPKKGSVVVYLPQGHFEHVQDFPVTAYDIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPESEQVEQSLREGQIEADGEEEDTEATVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKGSGSFAVPTGQQLNPGTFMDVVNALSTRCAFSVCYNPRFSSSEFIIPVHKFLKSLDCSYLVGMRFRMRFETEDAAERRFTGLIAGISDVDPVRWPGSKWRCLLVRWDDMEAARHNRVSPWEIEPSGSASSSSNMMAAGLKRTRIGMTSTKMEFPSPNGIGTSDFGESLRFRKVLQGQEILGVNPPFDGINAQSPRLYDLGRYYIGPNCPGIPPTGNNIRMQHAASDFSCNGTGFSESFRFQKVLQGQEILPSQPYGRALSIEEARANGRLGHFDGYQLLNSRNGWSVQMHDNAPHLHASVTPSQVSSPSSVLMFQQAVNPVSNSDYNNKKHSKMYQGLCASEVKARTFASPPSDDLTFSRRAPERASSLGMFDVRNQLGSSQSHNSVSALRNNQELVSSCKSSCRLFGFSLTEDTHVATKEVDASTITLPINAGPSFTRIVEDEFHPSRTLQSKAVGSNCTKVSYL 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00707 734 SMART B3_2 163 265 IPR003340 GO:0003677
Vimu2g00707 734 MobiDBLite consensus disorder prediction 1 52 - -
Vimu2g00707 734 ProSiteProfiles B3 DNA-binding domain profile. 163 265 IPR003340 GO:0003677
Vimu2g00707 734 Pfam Auxin response factor 290 370 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu2g00707 734 FunFam Auxin response factor 326 397 - -
Vimu2g00707 734 FunFam Auxin response factor 161 265 - -
Vimu2g00707 734 SUPERFAMILY DNA-binding pseudobarrel domain 156 270 IPR015300 -
Vimu2g00707 734 CDD B3_DNA 161 263 IPR003340 GO:0003677
Vimu2g00707 734 Gene3D - 161 265 IPR015300 -
Vimu2g00707 734 Pfam B3 DNA binding domain 163 264 IPR003340 GO:0003677
Vimu2g00707 734 MobiDBLite consensus disorder prediction 12 39 - -
Vimu2g00707 734 Gene3D - 327 400 - -
Vimu2g00707 734 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 54 689 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00707 Vimu-Chr2 4298133 4303035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00707 162 520 B3 DNA Binding Superfamily AT2G33860 60.278 1.11e-146 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu2g00707 B3 3.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00707 K14486 - gmx:100789906 1230.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00707 2 4298133 4303035 Vimu2g00707 2 4298133 4303035 ECH