Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00704 ACTACGTACAGAAGAAGCAAATCTGGAATTCCGATATACGTGCATGTGCTAAAGGAAACTAACACAAAGATGACATGGTGTAATGACTCTGATGAGGAGAAGAGGATTGAATCAATGACTATTACTCAGAAGACTACTGTCACTGACATAAAACTCCCCCAAGAAATTCGAACTGTAACATGCCCCTCCTGCGGCCATAACATTGAATTCAAAGATCAGGGTGGAATTCATGACTTGCCGGGGTTACCAGCTGGAGTGAAATTTGACCCAAATGACCAAGAAATACTAGAGCATTTAGAGGCAAAAGTGGGATCTGATGCATGCAAGCTTCATCCCCTTATTGATCAGTTCATACCAACTCTCGAAGGCGAGAATGGGATTTGTTCTACACACCCAGAAAAACTACCAGGAGTGGGAAAAGATGGACAGATCCGCCACTTCTTTCACAGGCCTTCAAAAGCATACACAACTGGAACAAGGAAAAGAAGAAAGGTTCACACAGATGAAGAAGGAAGTGAAACAAGATGGCATAAAACGGGAAAAACTAGAGCTGTTTTTGGAGCTGGTGGTGCTGTGAAGGGCTTTAAAAAAATACTAGTACTCTACACCAACTATGGCAGGAAAAGGAAGCCTGAGAAGACTAATTGGGTGATGCATCAATATCATCTTGGCAGCACTGAAGAAGAGAAAGATGGAGAATTAGTTGTTTCAAAGATTTTCTATCAGACACAACCCAGACAATCCGGTAATAATCCAAATATCATAGAGGAGCCGTACGAGAAAATGTTGAATGCTGATGGAAGGGGCCACAGCAACAATACATCAACGGCTAAAACTACAACTATTGTGGATTGCTACAATGCTCCTTACATAAATTATGATGATGTCCATTTGAGTTATAATAGGGAAAGCTCCACACAACTAATTATTCCTAGCTCGGTTGTTGCAGCTGATGACTCTTACATTCGCTATGCAATGGATGCAAAGAAAGCAAGATTTGAAACTAACACTGGGAAGAGTTTCTAG 1026 0.4123 TTYRRSKSGIPIYVHVLKETNTKMTWCNDSDEEKRIESMTITQKTTVTDIKLPQEIRTVTCPSCGHNIEFKDQGGIHDLPGLPAGVKFDPNDQEILEHLEAKVGSDACKLHPLIDQFIPTLEGENGICSTHPEKLPGVGKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRAVFGAGGAVKGFKKILVLYTNYGRKRKPEKTNWVMHQYHLGSTEEEKDGELVVSKIFYQTQPRQSGNNPNIIEEPYEKMLNADGRGHSNNTSTAKTTTIVDCYNAPYINYDDVHLSYNRESSTQLIIPSSVVAADDSYIRYAMDAKKARFETNTGKSF 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00704 341 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 40 294 IPR044799 GO:0003700
Vimu2g00704 341 Gene3D NAC domain 91 246 IPR036093 GO:0003677|GO:0006355
Vimu2g00704 341 ProSiteProfiles NAC domain profile. 82 242 IPR003441 GO:0003677|GO:0006355
Vimu2g00704 341 SUPERFAMILY NAC domain 76 242 IPR036093 GO:0003677|GO:0006355
Vimu2g00704 341 FunFam NAC domain-containing protein 73 91 246 - -
Vimu2g00704 341 MobiDBLite consensus disorder prediction 161 176 - -
Vimu2g00704 341 Pfam No apical meristem (NAM) protein 83 223 IPR003441 GO:0003677|GO:0006355
Vimu2g00704 341 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00704 Vimu-Chr2 4262516 4266709 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00704 24 251 NAC Transcription Factor Family AT4G28500 70.870 5.02e-118 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu2g00704 NAM 4.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00704 - - gmx:100791680 526.554