Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00699 ATGCCAGGTTATCCTCAACGCTCGTTGGTCTTTTCGGGTAGAAGGAAGGGAAAACCTACAGACCTGTCATGGTTATCGTTTTCTGGGGTGTCCCTATATATGTCTACAAACCATCATGATGTGTTTGTTGTAACTGGCACGGGTAATGCATCTTTTTCCCAGCGGTTCGGTCGGGTTATAGAGAGAGAAGAGGCAAAATGGTCCCTGGGAGCTGAAGGAAAGGAAAGGAAAGATAGTGTGAGCAGCAGTAGTAGGAACCACAAAGGAGTTGAGTTGGAAGTTGCATTAGCAGCAAGCAGTGCAAAGAGAAGAAGACGAAAGCAGCATTACGGTTTATATCTGTACCAATGGAAGCAATCCCTCGACGACCCTGACTCGTCTCTGGCGTCCTGGAACAACCGCGACACCACCCCATGCAACTGGGCCGGCGTCACATGCGGCCCAAATAGCAGCGCCGTCACTTCACTCGACCTCTCCAACTTCAACGTTGCTGGCCCATTCTCCGCCAACTTCCTCTGCCGCCTCCCCAACCTCACCTCCATCATCCTCTTCAACAACTCCATCAACCAAACCCTCCCTCTCCAAATATCCCTCTGCACCCCTCTCCTCCACCTTGACCTTTCCCAGAACCTCCTCACCGGCACCCTCCCCTATACACTCCCCCTCCTCCCCAGCCTCCGCTACCTTGACCTCACCGGCAACAACTTCTCCGGCCCTATTCCCCCCTCCTTTGGAACCTTCCAGAACCTCCAAACCCTCTCCCTCGTATTCAACCTCCTTGACGACGTCTTTCCGCCTTCTCTCTTCAATATCACCTCCCTTAAAACTCTCAACCTGTCCTATAACCCCTTCCACCCTTCCCCCATTCCTCACTCCATCGGCAACCTCACCAATCTGGAGACGCTCTGGCTCAGCGCTTGCAATCTCGTGGGCCCCATTCCCGACTCCGTCGGGAACCTCAAAAACCTTCGCGTTTTGGATTTGACCTTCAACAACCTCTATGGACCCATCCCTAGTTCGCTCACTCGTGTCACCACTCTCAAGCAGATTGAGTTGTACAACAACTCGCTCTCCGGTGAATTGCCTAGAGGACTCTCCAACCTCACTTCGTTGCGGCTCTTTGATGTTTCCATGAACCATTTGAGCGGGAGCATTCCCGATGAGCTGTGTCGTCTACCTCTCGAGAGTCTCAACCTCTATGAGAACGGTTTAACCGGGGAGTTGCCGCCGAGTATTGCTGACTCGCCCAACCTCTATGAGCTGAGGTTGTTCGGGAACAAACTCACCGGGTCATTGCCGGACAGTTTAGGGAAGTCCGGTCCTTTGAGGTGGGTTGACGTTTCCACCAACCGTTTCTCCGGTGGGATTCCGGCGAGCCTCTGTGATCACGGCGAGTTGGAGGAGATGTTGATGCTCGGGAACCAGTTCTCTGGGGAGATACCGGCGAGTTTGGGCTTGTGTCGGAGCTTGACGCGTGTGAGATTGGGTAAGAACCGGTTGTCCGGCGAGGTTCCGGCGGGTATGTGGGGCCTTCCGCATGTGTATTTTCTTGAACTGATGGGTAACTCGTTTAGTGGCTCGATTGCGAGGACCATTGGCGGGGCGAGGAATTTGTCTTCGTTGATTCTGACGAAGAACAATTTCTCGGGTGTGATCCCCGAGGAGATTGGGTGGTTGGAGAATCTTCAAGAGTTTTCTGGTGGTGATAACAGACTCAGTGGGTCGTTGCCTGGGAGTATTGTGAATCTCGGGCAGCTTGGCACTCTTGATCTTCACAACAATATGTTATCCGGGGAGCTCCCCAAGGAGATTCAGTCGTGGAAGAAACTGAATGACTTGAATTTGGCTAATAATGTGATTGGTGGGGAGATTCCTGATGGAATAGGCAGTTTGACTGTGATGAATTTTCTTGATCTTTCCAACAATCAATTTTCTGGGAATGTTCCTACGGCGTTGCAGAATTTGAAGCTCAATCAGCTCAATTTGTCTTATAATAGGCTTTCTGGAAAGCTTCCCCCACTGCTGGCCAAGGATATGTACAGGGCTAGTTTTATTGGCAATCCTGGCTTGTGCGGGGATTTCAAAGGTTTGTGTGATGGCAAAAATGGGGATAAGAGTAAGGGTTTTGTGTGGATTCTGCGAGCTATTTTTATAGTTGCCACTTTGGTGTTTGTCGTCGGTGTTGTCTGGTTTTACTTAAGGTACAAGAATTTCAAGAATGCCGAGAGATCTGTTGATAAATCAAAGTGGACTTTGATGTCGTTTCATAAACTGGGTTTCAGCGAAGATGAGATCTTGAATTGCCTAGATGAAGATAATGTGATAGGAAGTGGGTCTTCCGGGAAGGTTTACAAGGTTGTGTTGACCAGCGGGGAAGTGGTTGCTGTGAAGAAGATATGGAGCGGCGTCAAGAAGGAAGTAGACAGTGGAGATGTGGAGAGGGGTCAATTTCATCAAGACAATGCTTTTGACGCAGAGGTTGAAACTTTGGGCAAAATTAGGCACAAGAACATTGTCAAACTGTGGTGTTGCTGCACTACTAGGGATAGCAAGCTATTGGTTTATGAGTATATGCCGAATGAATATGCGTACACACTCAGAGTGAATGAGAAGAGTGATATATATAGCTTTGGTGTTGTCGTACTTGAGTTGGTTACTGGAAGGAGACCCATTGACCCTGAATTTGGGGAAAAAGACTTGGTTATGTGGGCGTGCACCACCTTGGATCAGAAAGGCGTGGAGCATGTGATTGACTCGAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCCTCAACATTGGCCTCATGTGCACCAGTCCTCTTCCAATCAACCGGCCTGCGATGAGAAGAGTGGTGAAGATGTTACAAGAGGTGGGCACAGAGAACCTAACGAAACCAGCCAATAAAGAAGGAAAGTTGTCCCCATATTACTATGACGATGGGTCTGATCATGGAAGTCTTGCTTAG 2973 0.4938 MPGYPQRSLVFSGRRKGKPTDLSWLSFSGVSLYMSTNHHDVFVVTGTGNASFSQRFGRVIEREEAKWSLGAEGKERKDSVSSSSRNHKGVELEVALAASSAKRRRRKQHYGLYLYQWKQSLDDPDSSLASWNNRDTTPCNWAGVTCGPNSSAVTSLDLSNFNVAGPFSANFLCRLPNLTSIILFNNSINQTLPLQISLCTPLLHLDLSQNLLTGTLPYTLPLLPSLRYLDLTGNNFSGPIPPSFGTFQNLQTLSLVFNLLDDVFPPSLFNITSLKTLNLSYNPFHPSPIPHSIGNLTNLETLWLSACNLVGPIPDSVGNLKNLRVLDLTFNNLYGPIPSSLTRVTTLKQIELYNNSLSGELPRGLSNLTSLRLFDVSMNHLSGSIPDELCRLPLESLNLYENGLTGELPPSIADSPNLYELRLFGNKLTGSLPDSLGKSGPLRWVDVSTNRFSGGIPASLCDHGELEEMLMLGNQFSGEIPASLGLCRSLTRVRLGKNRLSGEVPAGMWGLPHVYFLELMGNSFSGSIARTIGGARNLSSLILTKNNFSGVIPEEIGWLENLQEFSGGDNRLSGSLPGSIVNLGQLGTLDLHNNMLSGELPKEIQSWKKLNDLNLANNVIGGEIPDGIGSLTVMNFLDLSNNQFSGNVPTALQNLKLNQLNLSYNRLSGKLPPLLAKDMYRASFIGNPGLCGDFKGLCDGKNGDKSKGFVWILRAIFIVATLVFVVGVVWFYLRYKNFKNAERSVDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLTSGEVVAVKKIWSGVKKEVDSGDVERGQFHQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDSKLLVYEYMPNEYAYTLRVNEKSDIYSFGVVVLELVTGRRPIDPEFGEKDLVMWACTTLDQKGVEHVIDSRLDSCFKEEICKVLNIGLMCTSPLPINRPAMRRVVKMLQEVGTENLTKPANKEGKLSPYYYDDGSDHGSLA 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00699 990 SUPERFAMILY RNI-like 155 477 - -
Vimu2g00699 990 SUPERFAMILY Protein kinase-like (PK-like) 764 963 IPR011009 -
Vimu2g00699 990 Pfam Protein kinase domain 771 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00699 990 Pfam Leucine rich repeat N-terminal domain 113 146 IPR013210 -
Vimu2g00699 990 Gene3D Ribonuclease Inhibitor 395 701 IPR032675 -
Vimu2g00699 990 Gene3D Ribonuclease Inhibitor 286 394 IPR032675 -
Vimu2g00699 990 ProSiteProfiles Protein kinase domain profile. 769 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00699 990 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 861 958 - -
Vimu2g00699 990 SMART LRR_typ_2 175 199 IPR003591 -
Vimu2g00699 990 SMART LRR_typ_2 631 654 IPR003591 -
Vimu2g00699 990 SMART LRR_typ_2 223 249 IPR003591 -
Vimu2g00699 990 SMART LRR_typ_2 368 392 IPR003591 -
Vimu2g00699 990 SMART LRR_typ_2 271 296 IPR003591 -
Vimu2g00699 990 SMART LRR_typ_2 320 344 IPR003591 -
Vimu2g00699 990 SMART LRR_typ_2 583 606 IPR003591 -
Vimu2g00699 990 FunFam Receptor-like protein kinase HSL1 393 700 - -
Vimu2g00699 990 Gene3D Transferase(Phosphotransferase) domain 1 858 979 - -
Vimu2g00699 990 SUPERFAMILY L domain-like 394 691 - -
Vimu2g00699 990 ProSitePatterns Protein kinases ATP-binding region signature. 775 798 IPR017441 GO:0005524
Vimu2g00699 990 Pfam Leucine rich repeat 322 381 IPR001611 GO:0005515
Vimu2g00699 990 Gene3D Ribonuclease Inhibitor 111 285 IPR032675 -
Vimu2g00699 990 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 107 271 - -
Vimu2g00699 990 Gene3D Phosphorylase Kinase; domain 1 753 857 - -
Vimu2g00699 990 Pfam Leucine Rich Repeat 273 296 IPR001611 GO:0005515
Vimu2g00699 990 Pfam Leucine Rich Repeat 225 245 IPR001611 GO:0005515
Vimu2g00699 990 FunFam Leucine-rich receptor-like protein kinase family protein 289 387 - -
Vimu2g00699 990 FunFam Receptor-like protein kinase HSL1 753 857 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00699 Vimu-Chr2 4229716 4239272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00699 857 990 Receptor kinase-like Gene Family AT1G28440 71.739 5.17e-57 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu2g00699 Pkinase 1.7e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00699 - - gmx:100776936 1298.11