Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00696 ATGGACTACTATGGGATTTTGGAAGTTGACAAGAATGCCTCAGAAGAAGAATTGAAGAAAGCCTACAGAAAGCTTGCAATGAAATGGCACCCTGATAAGAACCCAACCAATAAAAAGGAGGCTGAGATTAGATTCAAACAGATATCTGAAGCCTACGAGGTAACACCATCCATTGTCTTTGATTTGCTGTGTCGGTGTGCTAAAGATGTTCTGAGTGATCCTCAGAAGAGAGAAATTTATGATAGGTATGGAGAAGGTGGGCATAAAGGTGAAATACCAACTAGGGATGAAGGTATGGCTTCCTTCTTCAGAACTGGGGATGGCCCACAACCATTTAATTTCAATCCCAGAAATGCAAACAACATTTTTGCAGAAGTGTTTGGGAATTCATCCCCATTTGGAGGAATGGGAAGGGGAAGGGGGTTTGAGTGTGGTGGTAGAGGCATGGGCATGAGGGGGAGATCATGGGTATCAAGATCCTTTGGTGGAATGTTTGGCAATGACATGTTCAGAGAAGGCGGGCCAATGAATGAAGCTCCACGCCGCAAGGCTCCTCCTATCCAAAATACACTGCTTTGCAGCCTTGAGGAACTCTACAAGGGGAGTACCAGAAAGATGAAAATCTCAAGGCAAATTACACTTGCAAGCGGGAGAGTTTTTCCTGTGGAGGAAATATTGAACATTGAAATCCAACCGGGATGGAAGAAGGGAACCAAAATCACTTTCCCAGAGAAAGGAAATGAGCAGCCAAATGTCATTGCAGCTGATCTTGTGTTTATAATTGATGAGAAACCTCACGGTATATTTACAAGAGTTGGTAATGATTTGGTTGTGACACAAAAGATATCACTTACAGAAGCTGAAGCTCTACCAGGCTACACCATCCAACTTACAACTCTTGATGGCAGGGATCTGAACATCGCCATAAACAACGCCACTGATCCAGATTACGAAGAAGTCGTCACCGGGGAAGGCATGCCAATTGCGAAAGATCCTTCAAAGAAGGGTAACCTTAGGATCAAATTCAACATCGAAATCCCAGATGTAGTCGGTGCCTGA 1059 0.4391 MDYYGILEVDKNASEEELKKAYRKLAMKWHPDKNPTNKKEAEIRFKQISEAYEVTPSIVFDLLCRCAKDVLSDPQKREIYDRYGEGGHKGEIPTRDEGMASFFRTGDGPQPFNFNPRNANNIFAEVFGNSSPFGGMGRGRGFECGGRGMGMRGRSWVSRSFGGMFGNDMFREGGPMNEAPRRKAPPIQNTLLCSLEELYKGSTRKMKISRQITLASGRVFPVEEILNIEIQPGWKKGTKITFPEKGNEQPNVIAADLVFIIDEKPHGIFTRVGNDLVVTQKISLTEAEALPGYTIQLTTLDGRDLNIAINNATDPDYEEVVTGEGMPIAKDPSKKGNLRIKFNIEIPDVVGA 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00696 352 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 348 - -
Vimu2g00696 352 FunFam DnaJ subfamily B member 13 266 348 - -
Vimu2g00696 352 SMART dnaj_3 1 76 IPR001623 -
Vimu2g00696 352 Gene3D DnaJ domain 1 138 IPR036869 -
Vimu2g00696 352 CDD DnaJ 2 54 IPR001623 -
Vimu2g00696 352 FunFam Dnaj homolog subfamily b member 183 264 - -
Vimu2g00696 352 Pfam DnaJ domain 2 54 IPR001623 -
Vimu2g00696 352 Gene3D - 186 264 - -
Vimu2g00696 352 Gene3D - 266 348 - -
Vimu2g00696 352 SUPERFAMILY HSP40/DnaJ peptide-binding domain 269 349 IPR008971 GO:0006457|GO:0051082
Vimu2g00696 352 CDD DnaJ_C 185 348 - -
Vimu2g00696 352 SUPERFAMILY HSP40/DnaJ peptide-binding domain 181 277 IPR008971 GO:0006457|GO:0051082
Vimu2g00696 352 PRINTS DnaJ domain signature 4 22 IPR001623 -
Vimu2g00696 352 PRINTS DnaJ domain signature 22 37 IPR001623 -
Vimu2g00696 352 PRINTS DnaJ domain signature 40 60 IPR001623 -
Vimu2g00696 352 PRINTS DnaJ domain signature 76 95 IPR001623 -
Vimu2g00696 352 SUPERFAMILY Chaperone J-domain 1 88 IPR036869 -
Vimu2g00696 352 Pfam DnaJ C terminal domain 188 347 IPR002939 -
Vimu2g00696 352 ProSiteProfiles dnaJ domain profile. 2 84 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00696 Vimu-Chr2 4207184 4209557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00696 3 83 C2H2 Transcription Factor Family AT1G74250 31.765 7.23e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00696 K09510 - gmx:100804763 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00696 2 4207184 4209557 Vimu2g00696 2 4207184 4209557 ECH