Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00684 ATGGCCTCTTCTTCTTCTTCGGGCTCTCGCGAGGGGCACTACAGAGGCGTCAGGAAGCGACCCTGGGGACGCTACGCCGCCGAAATACGTGACCCCTGGAAGAAGACACGTGTCTGGTTGGGCACATTCGATACTCCCGAGGAGGCCGCCCTCGCTTACGACGGCGCCGCCCGCTCTCTCCGCGGCGCCAAGGCTAAGACCAACTTTCCCCCGGCTCCCGCCCTCTGCCTCGACCTCAACGCCCCTTCTTCCGATCACCGCTGGCCCAACGTCCCCTCCCGCACCCTCGTCCTCACCGAGTTCCTCCACACCGCCGTTCTCAAAGACATCGAACCGCCACAGTCTCTTCCCCCCGCCACCGCCCCCGCTCTCCGCCGCCCCGACGGCGGCGTTCCTCTCGGTGGCGGAGTTCAGGTGGTGGAGAGCTCCCAGACGGCGTCTTTTTTGGGACTGGTTCGGCGCGGGATCCCCATCGACTTGAACGAGCCTCCACCGCTGTGGCTATGA 507 0.6588 MASSSSSGSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPALCLDLNAPSSDHRWPNVPSRTLVLTEFLHTAVLKDIEPPQSLPPATAPALRRPDGGVPLGGGVQVVESSQTASFLGLVRRGIPIDLNEPPPLWL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00684 168 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
Vimu2g00684 168 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 89 - -
Vimu2g00684 168 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Vimu2g00684 168 FunFam Ethylene-responsive transcription factor 2 13 71 - -
Vimu2g00684 168 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Vimu2g00684 168 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Vimu2g00684 168 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
Vimu2g00684 168 CDD AP2 13 72 IPR001471 GO:0003700|GO:0006355
Vimu2g00684 168 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Vimu2g00684 168 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00684 Vimu-Chr2 4122296 4122802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00684 4 168 AP2-EREBP Transcription Factor Family AT1G28360 49.495 1.88e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu2g00684 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00684 - - gmx:100798369 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00684 2 4122296 4122802 Vimu2g00684 2 4122296 4122802 ECH