Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00674 ATGTTGGCATGTGGTGATCGAGAACTTAAAATTTTGAGCTTCGGAGTCCCTTCTAAAACTCGCAGATTCCTTGGAACCAGCAAAATGTCGGGTAACTGTGAGAAAATGGTAGTCATCCCTTCAACGACCAACCAATGGCCACAGGTGGATGATCACAAGGTCTTGATGGGTTCCTTCGGTGGAAGTAACAATAGTAAGGTAATGGAAAAACCAGATCAAGAGCTTGTGCAGCAGCAGCTGCTGCACCAACAAACCCTCAAGTGCCCTCGTTGTGACTCATCAAACACTAAGTTCTGCTACTACAACAATTACAGTTTGTCTCAGCCACGACACTTCTGCAAAGCCTGCAAGCGCTACTGGACAAGAGGTGGAACCCTCAGGAACGTTCCTGTTGGTGGTGGGTGCAGAAAAAACAAGCGTGTTAAGCGTCCAATGACAAGCTCTTCTTCTGCTGCCATTGACACTGCTTCTTCTTCTAATTCTTCTTCTGCTCTCACCGCCGCTTCGCAACCACAGATCGACACTGCTTCAACCTCGAATCACATCAACCCTTTGTTTTATGGGTTGCCTAGTTGCTCCAGCGATGTGAATCTTCCGCTGTTCCCTAGGTTTGGCTCCAGAATCTCCAGTTCCGGGTTTGATCTTCAGCTGAATAATGCCCTTGGATTAGGTTTTTCATCCGGGGTTGTTTCAAATGAATCTAGTGAGAATAATAGCTTTAGAAACGGGTTTGGTTCTAATAACGCGCTTCTTTCAAGTTATAATTCCATCTTTGGTTCTTCTTCAAGTTCTACATCCACTACTCCAGCTTTGTCTTCACTGTTGAGCTCTACTTTGCTTCAACAGAAGTTTATCGGCAGTGGGTTGAAAGATGGTGCTGATAGCAACACTTTCCAGCATGGCTTAGGCTTAACCCCACTAGAGCAGTTGCAAATGCCGAGTGATAACAGTGAGGCAGGGATGGTGTCTTTAAAAGATGTGAAAGTAGAATTAGGACAAAACAGCAGGTTGGAGTGGAATGGTGCTTGTCAAAACCAGATCCAGCATGTGGGCATGTACGATCCGTCGCTTTATTGGAATAATTCAGCAACAGCTTTGGGTGTTTGGAACGATCAAGCTGCGAATATCGGTTCTTAA 1137 0.4538 MLACGDRELKILSFGVPSKTRRFLGTSKMSGNCEKMVVIPSTTNQWPQVDDHKVLMGSFGGSNNSKVMEKPDQELVQQQLLHQQTLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPMTSSSSAAIDTASSSNSSSALTAASQPQIDTASTSNHINPLFYGLPSCSSDVNLPLFPRFGSRISSSGFDLQLNNALGLGFSSGVVSNESSENNSFRNGFGSNNALLSSYNSIFGSSSSSTSTTPALSSLLSSTLLQQKFIGSGLKDGADSNTFQHGLGLTPLEQLQMPSDNSEAGMVSLKDVKVELGQNSRLEWNGACQNQIQHVGMYDPSLYWNNSATALGVWNDQAANIGS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00674 378 ProSiteProfiles Zinc finger Dof-type profile. 86 140 IPR003851 GO:0003677|GO:0006355
Vimu2g00674 378 MobiDBLite consensus disorder prediction 144 172 - -
Vimu2g00674 378 ProSitePatterns Zinc finger Dof-type signature. 88 124 IPR003851 GO:0003677|GO:0006355
Vimu2g00674 378 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 74 259 IPR045174 GO:0003700|GO:0006355
Vimu2g00674 378 Pfam Dof domain, zinc finger 84 140 IPR003851 GO:0003677|GO:0006355
Vimu2g00674 378 MobiDBLite consensus disorder prediction 135 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00674 Vimu-Chr2 4048797 4050218 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00674 86 378 C2C2-Dof Transcription Factor Family AT1G28310 40.968 2.20e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu2g00674 zf-Dof 2.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00674 - - gmx:100801049 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00674 2 4048797 4050218 Vimu2g00674 2 4048797 4050218 ECH
Vimu11g03618 11 58065554 58066507 Vimu2g00674 2 4048797 4050218 PCT