LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu2g00671	ATGACAAGCAATCTATCCCTTTCTCCTGGAATTCATAAAGAAGAAAAGTTAACTTTTGTTCAGATTGGGAATTATGAAAAGCAGTTGTGGGCATTCATGCATTCTAAAGGACTTTTGCACTCTGATACTCAAGACTTGTACCGCAAGGTTCGATCTGGTTATGAGATAAAAATCTTGAGTGATCTCATGCTTTCAGAACTTCAGGATGTTGAATATTCTTTGTGGAAGCTGCACTATAAGCATATCGATGAGTTTCGAAAACTAATAAAGAAAAGCTCCGGTAACGTGGAAAGCAAAATATCAGGAAGGCCTCAAAATCATGTTGTGCATAGAGACAATGACAGTCATTTAAAGCTATTTAAGATATTTCTGACAGAAGCTATTGAATTTTACCAAACTCTGATCGTCAAAATTAGAACAAAATTTGGAGTCCCCGTGGAGGCTTTGTTTTATAAAAAGGGTTGGAATTATGCTTCTGTCGAACCAGATGTCATGCAGAAATGCCAGTATTTGTGTCATCGCTGCCTAGTTTGTATGGGGGATCTCTCCAGGTATAAGCAACAATGTGAAAACCCAGATATTCAACATCATAATTGGTCGGTTGCTGCCACACATTATTTGGAAGCGACAAGGATTTGGCCAGACAGTGGTAACCCACAAAATCAGTTGGCTGTACTGGCAACATATATTGGTGATGAATTTCTTGCTCTCTACCACTGTATAAGAAGTTTAGCGGTTAAACAACCTTTTCCCGATGCCTGGAACAACCTTATCTTGTTGTTTGAAAAGAATAGATCATCTCCTCTGGAGTTTGATCCCAGAGAAGTCTCTGTAGATTTCATGAAACCTTTTTGCAGAATTGGTGAAGAGACCAAGGTGCAAGGCAAAGACGATAGCTCAAACTGCAAAAATTTGGAGGAATTCTCTATTGCATTGGCATCCACAATTGGAGGATTGGATCAAATGATGGAGCTAGAAGACAGGGAACTAAAGATCACGTTGGAATCCTATAGTCAAATGGACTTAGCCAGAAGAGGTCCTTTCCGAGCCATACAAGCAGTTTCTATTATCATATTCTCCCTCACAAATCTACTTGGAAAAAATGAATCTGAAGACACAAATGAAAGGCAGTTGAGGCAACTGGCATTAGCTGCTGCATTTAGCTTGATGGGACGTTTCACTGAAAGATGCCTAAAGGCGAGTTCTTTGAATCATTGCCCTCTGTTGCCTGCAGTTCATGTCTTTGTGGAGTGGTGTTCAAGCATACATGACATAAGTGCAACCGATCAAAATTGTACAAGAGCTATTTCCTATTTTTTTTATGTGTTTGTTGAACTTCTGAATCAACTAAAGGATGATAGAAAGGAAACCAAAAAGCATCTTGACAGATTTCCTCTGTGGGAGGATTATGAGTTGAGGGGCTTTATACCTATAGCTCGTTCACATGTCTCATTGGATTTCTGTGGTAATTGGGAACACTTAGACAACTTTGAAAGTGGAATCGATTTGCGCACTGATCGCATCAGAGAAGCAGCGATAAAGATGGCCACCAGATCAAATACTTGGCAGAAGTGGATTACATATGATAAATTAGGAAATAAATTTCATGTGGCTAGACCAGATGAAGATCATGACAAGGAAGAAACAAAAAATGTGGAGTCCAATAGCAATAACACAAAATTGGAAGAGCATTATCGACAATCTGAAGACGACACAGGAGGGTATGGCAAATGGATGAGAGAGGATAATCCAAGTAGATCCAGCACCATTGGAAAATCTTATGTAGTGGAAGAGGAAGAAGTTATTCTCTTCAGGCCCCTCACAAGGTATAATTCAGCACCATCACACCCCTCTAAATCCACTGTTGACCAGATGTCACCAAAACACAAGGACAACCAAAGCGTTCAGTCTAATGATTGTTTGCGCCGTGCTAGTTCTCTGCTTATGGCACAAAACCCAGCTCAAACTCACAGTGATCCATGGGAATTCCATGACAGATTTTTGGATTTAAGGAGTGACAGATCATTTAAACAACAAGAATCTTCAACAAAGGAATCAAATGCACACACTTTTCCTGAAGCCCTAATCTCTGCAGGCCCTCCTTCTCTCAATGCTTGGGTACTTGGTAGAGGAAGCTTGAGCGATTACAAAAGTAATGGAACAAATGACCTTGGTGGGCAAAGGCTGCAGCCAATTGAGGAAATAGCCTCTTCATCTCTGGTCAGTCTTTCCATCAATAAAACTGAAAATTCGGTCGCAAGTTCAGTAGATGAGTCTTCAATCTACCATTATTCCCCTTCTGCTACATATTCCCTTCCAGTGCCATCTGCTCCATTACTTCCTGATAATGCTACATGGTATACGGATGCACAGTCTTGTTTATCTCCTCCATTCTTTCCAGACAACTCAGATTGGAGTTCTACTTATGGACCACGTGGATATGATCCTAGATTTTCTGTTCTTTCTAATGGATACCCATCAGTTGGAAGAATGACTTCTTCAGAATGGCTGCGTTGGTATAGAGAGAACTACAAACCTGAAACGACCAACAATTACATGCTACCTACTCATTTGAATGCTCCTGGTCCTGTAAACTTCCTCTATCATGATACTTACAGGTTTGATCAATTTGATATGACAGACCTGAGGAATGAGCCGCAGTCTCTGCTAGAGTGTCTGAAGGAGAAGGAACGATACATTCATGGGAAATTGGAACTTCTATCTGAAACTTTTGTTCCGGGAACCATTTCAGAGTTGCTGCGACCAGACTCGGGGCCAGATTCCAAGATGAAGTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAAATCGATGACGACCAGAAGCTACGAGCATTTTGGGATAAGAGGATCTCTCAAGAGGTTCTTGGTGATGCTTTGGGCGAGGAATTCAAAGGCTATGTGTTCAAAATCACTGGAGGTTGTGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGCCGTGTTCGTCTCCTGCTGCACAGAGCAGGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGAAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTCTGAATTTGGTAATTGTAAAGAAGGGTGAAAGTGATTTACCAGGCCTGACCGATGTTGAAAAGCCAAGGATGAGGGGCCCAAAGAGAGCTTCGAAAATTCGCAAGCTGTTCAACCTTTCTAAGGATGATGATGTGCGGAAGTATGTCAACACATATAGGAGAACTTTTACAACTAAAGCTGGGAAAAAAGTGAGCAAGGCTCCAAAAATCCAACGACTGGTCACTCCCCTGACCCTCCAAAGAAAGAGAGCAAGGATCGCAGATAAGAAAAAGAGAATTGCCAAAGCAAAATCAGAGGCAGCGGAGTACCAGAAACTTCTCGCCTCCAGATTGAAGGAGCAGAGAGAACGCCGGAGTGAGAGCTTGGCTAAGAGAAGATCAAGACTTTCCAGTGCTACTAAACAAGCTGCCACAGCATAA	3540	0.4209	MTSNLSLSPGIHKEEKLTFVQIGNYEKQLWAFMHSKGLLHSDTQDLYRKVRSGYEIKILSDLMLSELQDVEYSLWKLHYKHIDEFRKLIKKSSGNVESKISGRPQNHVVHRDNDSHLKLFKIFLTEAIEFYQTLIVKIRTKFGVPVEALFYKKGWNYASVEPDVMQKCQYLCHRCLVCMGDLSRYKQQCENPDIQHHNWSVAATHYLEATRIWPDSGNPQNQLAVLATYIGDEFLALYHCIRSLAVKQPFPDAWNNLILLFEKNRSSPLEFDPREVSVDFMKPFCRIGEETKVQGKDDSSNCKNLEEFSIALASTIGGLDQMMELEDRELKITLESYSQMDLARRGPFRAIQAVSIIIFSLTNLLGKNESEDTNERQLRQLALAAAFSLMGRFTERCLKASSLNHCPLLPAVHVFVEWCSSIHDISATDQNCTRAISYFFYVFVELLNQLKDDRKETKKHLDRFPLWEDYELRGFIPIARSHVSLDFCGNWEHLDNFESGIDLRTDRIREAAIKMATRSNTWQKWITYDKLGNKFHVARPDEDHDKEETKNVESNSNNTKLEEHYRQSEDDTGGYGKWMREDNPSRSSTIGKSYVVEEEEVILFRPLTRYNSAPSHPSKSTVDQMSPKHKDNQSVQSNDCLRRASSLLMAQNPAQTHSDPWEFHDRFLDLRSDRSFKQQESSTKESNAHTFPEALISAGPPSLNAWVLGRGSLSDYKSNGTNDLGGQRLQPIEEIASSSLVSLSINKTENSVASSVDESSIYHYSPSATYSLPVPSAPLLPDNATWYTDAQSCLSPPFFPDNSDWSSTYGPRGYDPRFSVLSNGYPSVGRMTSSEWLRWYRENYKPETTNNYMLPTHLNAPGPVNFLYHDTYRFDQFDMTDLRNEPQSLLECLKEKERYIHGKLELLSETFVPGTISELLRPDSGPDSKMKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRAGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGESDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSRLSSATKQAATA	1179

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu2g00671	1179	SMART	Ribosomal_S6e_2	930	1058	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Vimu2g00671	1179	MobiDBLite	consensus disorder prediction	539	577	-	-
	Vimu2g00671	1179	MobiDBLite	consensus disorder prediction	1149	1179	-	-
	Vimu2g00671	1179	FunFam	Protein SMG7	19	265	-	-
	Vimu2g00671	1179	MobiDBLite	consensus disorder prediction	610	635	-	-
	Vimu2g00671	1179	Hamap	30S ribosomal protein S6e [rps6e].	533	1047	IPR020924	GO:0003735\|GO:0005840\|GO:0006412
	Vimu2g00671	1179	Pfam	Telomerase activating protein Est1	69	190	IPR019458	-
	Vimu2g00671	1179	MobiDBLite	consensus disorder prediction	539	588	-	-
	Vimu2g00671	1179	Pfam	Est1 DNA/RNA binding domain	202	481	IPR018834	-
	Vimu2g00671	1179	MobiDBLite	consensus disorder prediction	611	635	-	-
	Vimu2g00671	1179	Gene3D	-	1063	1164	-	-
	Vimu2g00671	1179	Coils	Coil	1119	1146	-	-
	Vimu2g00671	1179	MobiDBLite	consensus disorder prediction	1149	1167	-	-
	Vimu2g00671	1179	Gene3D	Tetratricopeptide repeat domain	17	267	IPR011990	GO:0005515
	Vimu2g00671	1179	Pfam	Ribosomal protein S6e	930	1058	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Vimu2g00671	1179	ProSitePatterns	Ribosomal protein S6e signature.	981	992	IPR018282	GO:0003735\|GO:0005840\|GO:0006412
	Vimu2g00671	1179	SUPERFAMILY	TPR-like	21	544	IPR011990	GO:0005515
	Vimu2g00671	1179	PANTHER	SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7	20	870	IPR045153	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu2g00671	Vimu-Chr2	4006085	4017772	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu2g00671	930	1179	Cytoplasmic Ribosomal Protein Gene Family	AT5G10360	71.600	4.27e-109	338

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu2g00671	-		-	vra:106775810	1718.36

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu11g03615	11	58021025	58023107	Vimu2g00671	2	4006085	4017772	PCT