Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00667 AGCCTTCTCCTTTTTCATGGGAATGACCATTTGAAATTACCACACCAATCTGCTGCTTGCACCAATAACAGTGATATGGAGAACAACCCTAGTCCATCTCCAGTTGATAGAAAATTCATTGAGAGGAACAGAAGAAATCAAATGAAGACTCTCTTCCGCAAACTCAACTCACTTGTGCCTCGTCAAACATCAAAGGCGGTTTCACTGCCGGATCAGCTGGAAGAAGCAACAAATTACATAAAGAAATTACAGATGAATATGGAGAAAATGGAGAAGAAGAAGAACGAGCTACTAGGAATAGAAAGAGCAAATGTGAGCATGAATGGAGGAGGAGAGAGAGTAGGGTTTAAATCTCCACGGATTGAGATCCAGAAGATGGGTTCAACCTTAGAGGTTGTTCTAATAACTGGGTTGGATTCTCAGTTCATGTTCGGTGAAACCATTCGTGTTCTTCATGAAGAAGGATTAGATGTTGTTAACGCTAGTTATAATGTTATCGAAGATGCAGTTTTCCATTCAATACACTGTCATCAGGACGAGAAATTTGCCAACGGAGCTGCTAAGATATCTGAGAGGCTAAAGAACTTCATCTACGAGTCTAGCTACTGTGTTTTTTAA 618 0.4029 SLLLFHGNDHLKLPHQSAACTNNSDMENNPSPSPVDRKFIERNRRNQMKTLFRKLNSLVPRQTSKAVSLPDQLEEATNYIKKLQMNMEKMEKKKNELLGIERANVSMNGGGERVGFKSPRIEIQKMGSTLEVVLITGLDSQFMFGETIRVLHEEGLDVVNASYNVIEDAVFHSIHCHQDEKFANGAAKISERLKNFIYESSYCVF 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00667 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 32 83 IPR011598 GO:0046983
Vimu2g00667 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 98 IPR036638 GO:0046983
Vimu2g00667 205 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 31 198 - -
Vimu2g00667 205 Gene3D - 34 107 IPR036638 GO:0046983
Vimu2g00667 205 Pfam Helix-loop-helix DNA-binding domain 40 84 IPR011598 GO:0046983
Vimu2g00667 205 Coils Coil 73 100 - -
Vimu2g00667 205 MobiDBLite consensus disorder prediction 16 37 - -
Vimu2g00667 205 MobiDBLite consensus disorder prediction 16 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00667 Vimu-Chr2 3982018 3983120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00667 35 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 42.775 5.81e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu2g00667 HLH 6.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00667 - - gmx:100784418 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03607 11 57873241 57875250 Vimu2g00667 2 3982018 3983120 PCT