Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00666 ATGTTTCTTTTTCATAAATCTGCTTTACCCTTCTCTGCTATTGGTTTGATACGGATTTTCCCACCCTCTGTGGCCGTTGGGGAGGCTTTTACGGAAGGTGGGTTTTGGCTAGAAGGGGCTTTTAATGGAACCAATCCTGCCCTCTTTTTTTCAAATGTAAAGATCGGGTTTTTGGTCATTCCTCCCCTCATTCTGGTCAAAGGGTCTCAACCTGGTTTTGAGATTTCTCAGAAAGGAAAAGTTGAGAATAAGATGGGCGAACATAGTAATTCTTGGATTAGGAGGACAAAGTTTTCACACACAGTGTGCCATCGTTTGGATCCATCTAGGTTAGGTCATGTTCCCATCGGCATTCAGTCAGAGCAAAAATCGAGTCCTGCCTCAGAGGTTCAGAGGCACCCCATAACGAACAAGCAGAGATCTTCGTCACCATTGCCTGTGACTTTTCTTTCTGAGGCCTTCAGGGAAGCTAGAGATGATCAGAAGAGGTTCTCCACACCGAATCCCCAGAGAGATAATAGGATTACGGGGAAGGAGTTGAACAAGGATTCTCCGGAGAGTAAGGAATCAAGTTCAAAGTTTCCTTCCCGTAGTCCAAGTAAGAAGGTGAAGTCGAAGCACAGCAAGGATGCAGCATGGACCAAGTTTTTGGATAATGGTGGAAGCAAGATTACTGCTGTCGAAACAGCCGAAGAGTGGAATATTGACATGTCTCAGCTGTTTTTTGGCCTAAAGTTTGCTCATGGAGCACATAGCCGACTTTACCATGGTGTATATAAGGACGAATCAGTAGCAGTTAAACTCATTATGGAACCCGAAGACGATGAAAGTGGAGATTTGGCTTCTCGATTAGAAAAGCAGTTCGTTAGAGAAGTTACCCTCTTATCTCGTCTTCACCATCAAAATGTTATAAAGTTCTCAGCAGCGTGCAGAAAGCCACCTGTTTATTGTATCATAACAGAATATCTTTCGGAAGGTTCCTTGAGGGCATATTTGCATAAGTTGGAGCACCAAACTATTTCTCTACAAAAGCTTTTAACTTTTGCCCTTGATATTGCTCGGGGTATGGAATATATACATTCTCAAGGTGTGATTCATCGAGACCTTAAGCCAGAGAATATCCTCATAGGCGAAGGTTGTCGCCTTAAAATTGCTGATTTTGGCATTGCATGCGAGGAAGCCTCTTGTGACATACTGGCGGATGACCCGGGCACCTACCGTTGGATGGCACCCGAGATGATCAAACGTAAATCCTACGGGAGAAAGGTTGATGTCTACAGTTTTGGGCTTATCTTATCGGAGATGTTGACTGGAACTATTCCATATGAGGATATGAATCCAATACAAGCTGCTTTTGCCGTTGTAAACAAGAATTCAAGGCCAGTTATTCCATCAGACTGTCCAGCTGCAATGAGAGCTTTGGTTGAGCAGTGTTGGAGCTCGCAACCAGATAAGAGGCCTGAGTTCTGGCAGATTGTGAAGATATTAGAGCAATTTCAATCTTCACTTGCTCGTGATGGAACCCTTACTCTGCTGCCAAACCCTTGTTGGGATAATAAAAAAGGGCTTCTTCATTGGATTCAAAAGCTTGGCCCTGTGCATCAAAATAGTGGCCCTGTGCCTAAACCCAAGTTCACGTGA 1641 0.4406 MFLFHKSALPFSAIGLIRIFPPSVAVGEAFTEGGFWLEGAFNGTNPALFFSNVKIGFLVIPPLILVKGSQPGFEISQKGKVENKMGEHSNSWIRRTKFSHTVCHRLDPSRLGHVPIGIQSEQKSSPASEVQRHPITNKQRSSSPLPVTFLSEAFREARDDQKRFSTPNPQRDNRITGKELNKDSPESKESSSKFPSRSPSKKVKSKHSKDAAWTKFLDNGGSKITAVETAEEWNIDMSQLFFGLKFAHGAHSRLYHGVYKDESVAVKLIMEPEDDESGDLASRLEKQFVREVTLLSRLHHQNVIKFSAACRKPPVYCIITEYLSEGSLRAYLHKLEHQTISLQKLLTFALDIARGMEYIHSQGVIHRDLKPENILIGEGCRLKIADFGIACEEASCDILADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILSEMLTGTIPYEDMNPIQAAFAVVNKNSRPVIPSDCPAAMRALVEQCWSSQPDKRPEFWQIVKILEQFQSSLARDGTLTLLPNPCWDNKKGLLHWIQKLGPVHQNSGPVPKPKFT 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00666 546 ProSiteProfiles Protein kinase domain profile. 240 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00666 546 Gene3D Transferase(Phosphotransferase) domain 1 325 510 - -
Vimu2g00666 546 FunFam serine/threonine-protein kinase HT1 325 514 - -
Vimu2g00666 546 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 156 502 - -
Vimu2g00666 546 CDD STKc_MAP3K-like 247 496 - -
Vimu2g00666 546 SUPERFAMILY Protein kinase-like (PK-like) 225 496 IPR011009 -
Vimu2g00666 546 MobiDBLite consensus disorder prediction 158 209 - -
Vimu2g00666 546 Gene3D Phosphorylase Kinase; domain 1 228 324 - -
Vimu2g00666 546 FunFam Kinase suppressor of Ras 1 229 323 - -
Vimu2g00666 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 364 376 IPR008271 GO:0004672|GO:0006468
Vimu2g00666 546 MobiDBLite consensus disorder prediction 120 143 - -
Vimu2g00666 546 MobiDBLite consensus disorder prediction 175 190 - -
Vimu2g00666 546 Pfam Protein tyrosine and serine/threonine kinase 245 496 IPR001245 GO:0004672|GO:0006468
Vimu2g00666 546 PRINTS Tyrosine kinase catalytic domain signature 467 489 IPR001245 GO:0004672|GO:0006468
Vimu2g00666 546 PRINTS Tyrosine kinase catalytic domain signature 320 333 IPR001245 GO:0004672|GO:0006468
Vimu2g00666 546 PRINTS Tyrosine kinase catalytic domain signature 358 376 IPR001245 GO:0004672|GO:0006468
Vimu2g00666 546 PRINTS Tyrosine kinase catalytic domain signature 404 414 IPR001245 GO:0004672|GO:0006468
Vimu2g00666 546 PRINTS Tyrosine kinase catalytic domain signature 423 445 IPR001245 GO:0004672|GO:0006468
Vimu2g00666 546 SMART serkin_6 240 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00666 Vimu-Chr2 3971540 3973857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00666 85 546 MAP Kinase Kinase Kinase AT5G58950 54.735 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu2g00666 PK_Tyr_Ser-Thr 4.3e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00666 - - gmx:547826 799.275