Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00651 ATGGCACTTCACCAATACATTGCCGGGGATTTGAAAACCATTGAAGATGCTGTGACCGAGACAGAAAACTCCAATGGTTGTTTTGACTGTAACATCTGCTTAGACTTTGCACATGATCCAGTGGTGACCCTATGTGGCCACCTCTACTGCTGGCCGTGCATCTACAAGTGGCTTCTCGTCCAACATGATTCCCTTACAACCGCTGAGCGCCCTCAGTGCCCTGTTTGCAAGGCTGTTATATCCAATAGCACAATGGTTCCACTCTATGGCCGTGGCAATCCCACAGCTGAAGGGAAAACATCTTGTGATGTTTTGATACCTCCAAGACCACCAGCTTCATGTGCTCAAGTTCTTGTGGCAGCGCCACCTCGAAGGGGTCAGCGTCTTCCATATCGTAATCCTTACCAAGGTCACTATTTCAGCTCTCGTTCATACCAAGAAGAGAACGCCACTTCTCAAACGCACCACCACCCTGTGACTGGAATGTTTGGAGAGATGATTTATTCCAGAGTGTTTGGCAACCCAGAAAATTTGTATGCATACCCCAATTCTTATCAGCTCATGGGAAGTTCTACCACTGGATTGAGAAGACAAGAGATGCAGGCACACAAATCTTTGAACAGAATCTCTATTTTTCTCTTTTGTTGTTTCCTTATCTGTCTTCTTGTCTTCTAA 675 0.4593 MALHQYIAGDLKTIEDAVTETENSNGCFDCNICLDFAHDPVVTLCGHLYCWPCIYKWLLVQHDSLTTAERPQCPVCKAVISNSTMVPLYGRGNPTAEGKTSCDVLIPPRPPASCAQVLVAAPPRRGQRLPYRNPYQGHYFSSRSYQEENATSQTHHHPVTGMFGEMIYSRVFGNPENLYAYPNSYQLMGSSTTGLRRQEMQAHKSLNRISIFLFCCFLICLLVF 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00651 224 SUPERFAMILY RING/U-box 26 89 - -
Vimu2g00651 224 SMART ring_2 30 76 IPR001841 -
Vimu2g00651 224 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 126 - -
Vimu2g00651 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 221 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vimu2g00651 224 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Vimu2g00651 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 103 IPR013083 -
Vimu2g00651 224 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Vimu2g00651 224 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00651 Vimu-Chr2 3856351 3857025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00651 6 210 C3H Transcription Factor Family AT4G27470 40.541 2.81e-45 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00651 K10666 - gmx:100816864 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00651 2 3856351 3857025 Vimu2g00651 2 3856351 3857025 ECH
Vimu11g03592 11 57699923 57702161 Vimu2g00651 2 3856351 3857025 PCT