Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00637 ATGTACATAGTTTCCATGGGAAGGTCTTTCAAGGACTCTCTGAAACTGCTTGAAGCTGATATTCACCATGCCAATACCCTGGCATCGGATTTTCCAAGGGAATATGACGGTGCATGCCTTCAAATGAGAATGTCATACAGTATGGCAGCACACCTATTTCTCTTTTTGGTACAATGGACAGATTGCAATCTTGCCGGGGCCCTAGGATTGTTAAGAATCCTAATATACAAGGTTTATGTAGATGGGACAACTACCATGTCTACCCATGAAAAGAAAGCAAGTATTAGAGAATTCTATGCGGTCATATATCCCTCATTGTTGCAACTGCAAAAAGGTGTAACTGATACAGAGGATAAAAAACAGAAGGCTGTATGCTTGGAGAGGTATCGGAAAAGAGACGAAGATGAGCACAGACAGCCTTCGGATATAGACATTGAAAGGGAAGAGGAATGTGGAATATGCATGGAGATGAACAGTAAGATTGTGTTACCCGACTGCAACCATGTCATGTGCCTGAAATGTTACCACGAATGGAGAACAAGATCACAGTCATGCCCCTTTTGCCGTGACAGTCTGAAGAGAGTAAACTCAGGCGATCTCTGGGTGTTTACTGATGGTAGGGATGTTGTAGACATGGCAACAGTGACAAGAGAGAATCTTAAAAGGCTTTTCATGTACATAGATAAGTTGCCTTTGATCATTCCAGACTCTCTTTTTGACACTTATGACTCTCATCTAAGATGA 744 0.4194 MYIVSMGRSFKDSLKLLEADIHHANTLASDFPREYDGACLQMRMSYSMAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHEKKASIREFYAVIYPSLLQLQKGVTDTEDKKQKAVCLERYRKRDEDEHRQPSDIDIEREEECGICMEMNSKIVLPDCNHVMCLKCYHEWRTRSQSCPFCRDSLKRVNSGDLWVFTDGRDVVDMATVTRENLKRLFMYIDKLPLIIPDSLFDTYDSHLR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00637 247 PANTHER RING FINGER PROTEIN 41, 151 8 244 - -
Vimu2g00637 247 FunFam RING/U-box superfamily protein 119 198 - -
Vimu2g00637 247 SUPERFAMILY RING/U-box 145 196 - -
Vimu2g00637 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Vimu2g00637 247 SMART ring_2 151 188 IPR001841 -
Vimu2g00637 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Vimu2g00637 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 213 IPR013083 -
Vimu2g00637 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00637 Vimu-Chr2 3780912 3785506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00637 151 206 C3H Transcription Factor Family AT5G01960 39.286 1.73e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00637 K25840 - gmx:100789769 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03582 11 57516957 57520403 Vimu2g00637 2 3780912 3785506 PCT