Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00632 ATGCAGATTGCAGAGTATACCAGGATCATTATGACTTGCGGCTGCTTTGGAGCCAAATCTGCTAAGAAAAGACGCTCTTCTAATGTTGCTGGCGATATTGATGGTTATCCCCTGGATAATGTTAGGCAATTTTCTGATACAGAACTGAGATTGGCAACTGATAATTACCACTCAAACAATAAGATAGGACGAGGAGGTTTTGGAACAGTTTACCAGGGAACCTTAAAAGATGGAAGACGTATAGCAGTGAAGACTCTCTCATTTTGGTCAAAGCAGGGAGTTCGTGAATTTTTGACTGAAATTAAAACTTTGTCAAATGTTAAACATCCAAATCTTGTTGAATTGATTGGATTCTGCATCCAAGGACCTAGTCGTACATTAGTCTACGAGTATGTGGAAAATGGCAGCCTTAACAGTGCACTACTTGGCACAAGGAATGAAAACATTAAACTAGACTGGAGAAAAAGATCTGCTATCTGTGTAGGTACTGCTAAGGGTCTTGCTTTTCTTCATGAAGAACTTTCACCACCAATTGTGCACAGAGACATCAAAGCTAGTAATGTACTACTTGACAAAAATTTCAATCCCAAAATAGGTGATTTTGGGCTGGCTAAATTATTTCCAGATGGTATCACTCACGTTAGCACAAGAATTGCTGGAACAACTGGTTACTTAGCACCTGAATATGCAATAGGAGGCCAGTTAACCAAGAAGGCTGATATATACAGCTTTGGAGTTCTTATACTTGAAATAGTTAGTGGCAGAAGCAGTGCCAGGAGAACAAATGGGACAAACGGAGAAGGATCACCCAAATTCCTCTTGGAATGGGCCTGGCAACTTTATGAGGAGGGTAAACTGTTGGAGTTTGTAGATCCAGAAATGGAAGAATTTCCTGAGGAAGAGGTACTGAGATACATGAAATCTGCAGCAAGTAGAAGGCCTTTGATGATACAAGTTGTTAATATGCTATCCAAGGCAATCCAACTCAATGAGAAAGAACTTACAGCACCAGGATTATTCACAGATGAAAGAGAATCTTCTAGTAGGAACTCACAACCTGCCCCTTTAATTACCTCTACTCATCTTGCTATTACTCATGTTACCCCACGATGA 1113 0.4016 MQIAEYTRIIMTCGCFGAKSAKKRRSSNVAGDIDGYPLDNVRQFSDTELRLATDNYHSNNKIGRGGFGTVYQGTLKDGRRIAVKTLSFWSKQGVREFLTEIKTLSNVKHPNLVELIGFCIQGPSRTLVYEYVENGSLNSALLGTRNENIKLDWRKRSAICVGTAKGLAFLHEELSPPIVHRDIKASNVLLDKNFNPKIGDFGLAKLFPDGITHVSTRIAGTTGYLAPEYAIGGQLTKKADIYSFGVLILEIVSGRSSARRTNGTNGEGSPKFLLEWAWQLYEEGKLLEFVDPEMEEFPEEEVLRYMKSAASRRPLMIQVVNMLSKAIQLNEKELTAPGLFTDERESSSRNSQPAPLITSTHLAITHVTPR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00632 370 ProSitePatterns Protein kinases ATP-binding region signature. 62 84 IPR017441 GO:0005524
Vimu2g00632 370 SUPERFAMILY Protein kinase-like (PK-like) 37 323 IPR011009 -
Vimu2g00632 370 MobiDBLite consensus disorder prediction 341 362 - -
Vimu2g00632 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Vimu2g00632 370 FunFam cold-responsive protein kinase 1 27 131 - -
Vimu2g00632 370 FunFam Putative LRR receptor-like serine/threonine-protein kinase 132 335 - -
Vimu2g00632 370 ProSiteProfiles Protein kinase domain profile. 56 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00632 370 Gene3D Transferase(Phosphotransferase) domain 1 132 341 - -
Vimu2g00632 370 Pfam Protein kinase domain 56 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00632 370 CDD STKc_IRAK 62 325 - -
Vimu2g00632 370 SMART serkin_6 56 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00632 370 Gene3D Phosphorylase Kinase; domain 1 30 131 - -
Vimu2g00632 370 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00632 Vimu-Chr2 3723586 3726869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00632 44 342 Receptor kinase-like Gene Family AT1G56120 50.000 3.04e-95 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu2g00632 Pkinase 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00632 - - gmx:100809588 599.742