Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00611 ATGAATAGCATGGCTTCATCTTCAGAATATCAAACTCATCAGCACCCTCATCTTCCTCCGGGGTTTCGGTTCCACCCCACAGATGAGGAACTGGTGGTTCACTACCTCAAGAGAAAAGCAGACTCTGTTCCTCTTCCTGTCGCCATCATCGCCGAGGTTGATCTCTACAAGTTCGATCCCTGGGAGCTCCCAAGTAAAGCAACGTTTGGCGAGCAAGAGTGGTACTTTTTCAGTCCAAGGGATAGGAAATACCCAAATGGGGCGAGGCCTAACAGGGCTGCTTCTTCTGGGTATTGGAAAGCTACCGGAACTGACAGGCCCATTCTTGCATCTCATGGCAACCACAAAGTTGGAGTCAAGAAAGCACTTGTTTTCTATGGTGGCAAACCTCCAAAAGGGGTTAAAACCAATTGGATCATGCACGAGTACCGGCTTCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAAAACAACAGTACCATGATGCCAAGGTTTCCTTTGATGGAGCAGAATAAGGAGCTTTCTACGGAGAGCACTATGCTACCAATGATGTCAACTTTGTCAATGGCCAACAATAACACCACTCAGAATTCCAAAGCCGGGACTTCAAGAAGTGCAAGTTATGGACCAATGGGACTAGAAAATGATGACAGTTTCTTTGATGGAATTGTAGGAGTTGACCATAGCATGCAGCAAGATGTTTCTGATTCACACCAAGTCTCTTCAAAGGGAATCTACCCTGTGAAACGAGCACTCTCGTCACAGTTTTGGAATGACACAATGTCATCCTCTTCGAGCAGGAGATTCCATTGTGATCTCAATGCTGGAAGCAACACTGTAGAGGAAGAAAGTTCCTTCGTTTCACTGCTTAACCACCTTCCACAGAACACAGCGTTTCACCCAAATGCACTTCTTGGCCCAGTTAGTCATGATGTATTGAGGCAACAGTTTCAGCTTCCAAACATGAACTGGAATGTTTAG 984 0.4563 MNSMASSSEYQTHQHPHLPPGFRFHPTDEELVVHYLKRKADSVPLPVAIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAASSGYWKATGTDRPILASHGNHKVGVKKALVFYGGKPPKGVKTNWIMHEYRLLDDWVLCRIYKKNNSTMMPRFPLMEQNKELSTESTMLPMMSTLSMANNNTTQNSKAGTSRSASYGPMGLENDDSFFDGIVGVDHSMQQDVSDSHQVSSKGIYPVKRALSSQFWNDTMSSSSSRRFHCDLNAGSNTVEEESSFVSLLNHLPQNTAFHPNALLGPVSHDVLRQQFQLPNMNWNV 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00611 327 MobiDBLite consensus disorder prediction 1 21 - -
Vimu2g00611 327 Gene3D NAC domain 27 162 IPR036093 GO:0003677|GO:0006355
Vimu2g00611 327 SUPERFAMILY NAC domain 12 158 IPR036093 GO:0003677|GO:0006355
Vimu2g00611 327 FunFam NAC transcription factor 56 27 148 - -
Vimu2g00611 327 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
Vimu2g00611 327 ProSiteProfiles NAC domain profile. 18 169 IPR003441 GO:0003677|GO:0006355
Vimu2g00611 327 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00611 Vimu-Chr2 3598205 3600214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00611 15 326 NAC Transcription Factor Family AT1G61110 53.009 4.02e-106 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu2g00611 NAM 1.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00611 - - gmx:100806369 523.087