Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00608 ATGATGGCGGATGAGGGATTCGGCTACGCGTGCTTCTTGGACGGTGACGGTAACGCCGCCGACGACGACAAGTTTTGCATCGATCTAGAAACCGTTATGAGCGTTCTCGACGAGGATACCGATCCCTCTGAGTATTTTTCTCCAATGTCGCTTAGGTTCCCTGTTGGGATTTGTAAAATTTCGTCTGTAGTGCGGCGTGTGAAGATTTCAGTAGCATTATTAGTTCAGACCAAGAGTAGTCCCGAGGATTTTTCTTTGAAAAATATATCACCTGGTGAATCTGGCATCCATGATAATTTTCTACTTCAAAACGGGAATTCTGTGCTTGAATGTGAACATGAAAACCAGGGACCTTCACCACAGACTTTCTCTTCCCCAAATGCTCTTGCTGGCGGTTACATGGACCATGAAGGTGATTTTGACTTCACAGAAAGGACAGGAGTTTCCAATTGTGAGATGCCCGCTTACATAGGCACAAGGTTCCCTGATCCTGAGGTGAATTCAACCAATGTAGCTGTCTGTGGAGATAGTTTGAAACGGAATATGTGGAAGTGTGGAAATGATAACCTAATCAAGCATGTAGGATATGGTGCAGACTCTGAACCTGCTTCAAATGGCTCTATCATTGAGAATATTGATGTAAAATTTGATGATTATGAAACCTATACGCAAGAGATCACTGGACCTTCTGGTAAACAGGAAAATGACTCATGTACATCGTTTGAAAGATCGTTTGTTGATGCCGATAGATCGTCTTATGTTGCAACTTCAACTGATTCCTCTATTTGTCAAGGTTCCAATGTTCCCAATGATTTTAGTAACTATTATCCTTCTTTTAATATTTACCAAGGTATGGATGATAGACCTGCTGTTGCCAACGCTTCTGATTGTTTGTTTAATGGTGCTTATTCTCACGTGTGGGAAAATGAAAATGTGACGCGGAACACGAAGGTTAATAAGATGGAGTTATTTACTGATACAAGTGGTGGAATGCGCTCCATTCTCAGTGGAGGGATATCTTTTCAAGATAATCAATATACGTTCGAAGATAGTAAATATGCATCGTGTTTTCCTGGTAATGTTCTCTTTGAAGACAGTGCACCAGTGCAACACTCAATTTGTGCTTCATATATTTCAAGTGCAGGTCAATCACTTAATGTCAAAACTGATAGAGATGGACTGATTATACCTTACCAAAATCCTGCTCACAGTGATGATGTTGAGTTCAATGTAGGTCAAGAGATGAAACAACAACCTGGAACTTTTCCTGCTGTTGGATCTCAGGGTAATGATTTATTGAAGTGTGAGGATAGTGTTACATTCACAAGGACTGAGAAAGCCAAATATTATCAAGACGCTATTGGTGGAGCTGCCAATTACTTTCCAGGAATTATGGGAGATTTAAATTTAAAACCATTTGACAAATCTTTGTATAATCTCCAGACATCAATTGCCAGTGGGAAGCTGTATAATTGTGTTATGACTGAAGGAGAGGGAAAATTAATTGAACATAAAAGTATTGGTTCTCAGCTTTCAAAAGGAAGTACCGACAAATCCAATATCGAGGATGAATCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTGTAAGTCGATCAGCAGAGCTTGGGAATTCCCTCAACACATTACAATCTTCTAGAGGTGTTTATACTCAGTCTTCTATGGTGGGAGTTATGAGACCTAAGGCACGTGATGAGCAGTACATATTACGAGTTGCATTGCAGGATCTTTCCCAACCAAAATCAGAGGTTAGTCCACCAGATGGACTGCTGGCAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACTTCAAGTTTGTACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACAGTGTCGACCATTGCTTTAATATTAAAGGAAAGACCTGCATTGGTGAATAAATGCAACATTGCAAAGAAAAGTGAATTAGAAACTTTGAACCTGGATGCAGATGATGATCAGCTTCCTGAGACTGGCCTAGTGAATAATGAATCTAATATGGTTCAGGATTTGTCTTGTATAAATCCAAACAAAAATATGAATTTGTTAGTGCATGTAAAAGGAAGGCCGTCTGCTGGAACTCTTGTTGTTTGTCCAACTAGTGTCTTGCGGCAATGGGATGAAGAGTTGCACAGTAAGGTAACTGGCAAAGCAAATCTTTCTGTCCTAGTGTACCATGGTAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGCATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTGACAAAGATGATGAAGAAAAAGGAGCTTATGATGATCCTGCAGTATCAAGCAAGAAAAGGAAATGCCCTTCTAGTTCTAAAAGTAGCAAGAAGGGATTGGACTCTGCGATGCTTGACTCTGTTGCTCGTCCTCTTGCAAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATCAAGAACCACAGAACTCAAGTTGCAAGGGCTTGTTGGGGTCTTAGGGCAAAGCGGAGATGGTGCTTATCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTATAGCTACTTCAGATTTTTAAGATATGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCAATCAGCAAAAGTCCATCGAAAGGATATAGAAAGCTACAAGCTGTCTTAAAAACAATCATGTTACGTCGCACAAAAGGCACACTTCTTGATGGGGAACCTATCATTTCCTTGCCACCTAAATCTGTAGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCTAGACTAGAGGCTGATTCCCGAGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAATTATGTTAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCATGCGATCATCCCCTGCTTGTCAAGCGTTACAATTCTAACTCTCTCTGGAAATCTTCAGTTGAGATGGCTAAGAAGCTCACTCAGGAAAAGCGATTATCTCTTTTAAATTGTTTGGAAGCTTGTTTGGCCCTCTGCGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCATGTTTTTTGTAACCAGTGCATTTGCGAACATCTTACTAGTGATGACAATCAGTGCCCTACTACAAACTGCAAAATTCGATTAAGCATGTCTTCAGTGTTCTCCAAAGTCACATTGAATAGTTCTTTTTCTGATCAGGCTTGTGATAATTTGCCTGGTTACTCTGGTTGTGAAGTGGATGAATCGGAGTTTTATTCTGAGAGTCAGCCATATAATTCTTCAAAAATTAGGGCTGCACTTGAGGTTTTGGAGTCTTTGTCTAGACCACAATGCTGTGCTCCCCAAAGCAATTCTGTGCATAGCATTCTGGAGGATACTACTGGTGGCCTCAGCAGCTCATCTTGTGACCGAATGAAATCCTCAAATGAATGTCCTGAGAACCAAAATGTGTTAGAGAGAAGCTCTGATGATTCAGTTGGTGGTGAGAAAGCTATAGTGTTTTCTCAGTGGACTAGGATGCTAGATTTACTTGAAGCATGTCTTAAGAATTCTTCAATCCAGTATAGAAGACTTGATGGAACAATGTCTGTCTCGGCAAGGGATAAAGCTGTTAAAGATTTTAACACTCTCCCTGAGGTTTCAGTCATGATTATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTTGCTGCCTGCCATGTTCTTATGCTAGATCTTTGGTGGAATCCTACAACTGAAGATCAGGCTATAGACAGAGCGCATCGTATTGGACAGACCCGTCCTGTCACAGTCTTACGGTTAACTGTTAGAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAAAAGCGAAAAATGGTTGCGTCTGCCTTTGGAGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATCTAAAATACTTGTTCATGATGTGA 4062 0.4097 MMADEGFGYACFLDGDGNAADDDKFCIDLETVMSVLDEDTDPSEYFSPMSLRFPVGICKISSVVRRVKISVALLVQTKSSPEDFSLKNISPGESGIHDNFLLQNGNSVLECEHENQGPSPQTFSSPNALAGGYMDHEGDFDFTERTGVSNCEMPAYIGTRFPDPEVNSTNVAVCGDSLKRNMWKCGNDNLIKHVGYGADSEPASNGSIIENIDVKFDDYETYTQEITGPSGKQENDSCTSFERSFVDADRSSYVATSTDSSICQGSNVPNDFSNYYPSFNIYQGMDDRPAVANASDCLFNGAYSHVWENENVTRNTKVNKMELFTDTSGGMRSILSGGISFQDNQYTFEDSKYASCFPGNVLFEDSAPVQHSICASYISSAGQSLNVKTDRDGLIIPYQNPAHSDDVEFNVGQEMKQQPGTFPAVGSQGNDLLKCEDSVTFTRTEKAKYYQDAIGGAANYFPGIMGDLNLKPFDKSLYNLQTSIASGKLYNCVMTEGEGKLIEHKSIGSQLSKGSTDKSNIEDESDVCIIEDISHPAPVSRSAELGNSLNTLQSSRGVYTQSSMVGVMRPKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPALVNKCNIAKKSELETLNLDADDDQLPETGLVNNESNMVQDLSCINPNKNMNLLVHVKGRPSAGTLVVCPTSVLRQWDEELHSKVTGKANLSVLVYHGSNRTKDPYELAKHDVVLTTYSIVSMEVPKQPLVDKDDEEKGAYDDPAVSSKKRKCPSSSKSSKKGLDSAMLDSVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISKSPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLTQEKRLSLLNCLEACLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTSDDNQCPTTNCKIRLSMSSVFSKVTLNSSFSDQACDNLPGYSGCEVDESEFYSESQPYNSSKIRAALEVLESLSRPQCCAPQSNSVHSILEDTTGGLSSSSCDRMKSSNECPENQNVLERSSDDSVGGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVSARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00608 1353 Gene3D - 813 926 IPR038718 -
Vimu2g00608 1353 Gene3D - 690 788 IPR038718 -
Vimu2g00608 1353 MobiDBLite consensus disorder prediction 1171 1192 - -
Vimu2g00608 1353 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1182 1348 IPR001650 -
Vimu2g00608 1353 ProSitePatterns Zinc finger RING-type signature. 1056 1065 IPR017907 -
Vimu2g00608 1353 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 933 1352 IPR027417 -
Vimu2g00608 1353 SMART ultradead3 600 902 IPR014001 -
Vimu2g00608 1353 Pfam Zinc finger, C3HC4 type (RING finger) 1041 1078 IPR018957 GO:0046872
Vimu2g00608 1353 MobiDBLite consensus disorder prediction 780 815 - -
Vimu2g00608 1353 MobiDBLite consensus disorder prediction 780 800 - -
Vimu2g00608 1353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1038 1104 IPR013083 -
Vimu2g00608 1353 CDD SF2_C_SNF 1197 1305 - -
Vimu2g00608 1353 ProSiteProfiles Zinc finger RING-type profile. 1041 1080 IPR001841 -
Vimu2g00608 1353 SMART helicmild6 1212 1295 IPR001650 -
Vimu2g00608 1353 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 589 925 IPR027417 -
Vimu2g00608 1353 SMART ring_2 1041 1079 IPR001841 -
Vimu2g00608 1353 Gene3D - 940 1352 IPR027417 -
Vimu2g00608 1353 Gene3D - 573 666 IPR038718 -
Vimu2g00608 1353 SUPERFAMILY RING/U-box 1040 1087 - -
Vimu2g00608 1353 CDD DEXDc_SHPRH-like 604 925 - -
Vimu2g00608 1353 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 697 785 - -
Vimu2g00608 1353 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 807 937 - -
Vimu2g00608 1353 Pfam SNF2-related domain 624 1002 IPR000330 GO:0005524|GO:0140658
Vimu2g00608 1353 Pfam Helicase conserved C-terminal domain 1194 1295 IPR001650 -
Vimu2g00608 1353 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 619 887 IPR014001 -
Vimu2g00608 1353 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 442 1352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00608 Vimu-Chr2 3568862 3578665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00608 494 1352 RAD5 or RAD16-like Gene Family AT1G61140 59.954 0.0 972
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu2g00608 SNF2_N 6.5e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00608 - - gmx:100805307 1956.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03548 11 56970395 56979957 Vimu2g00608 2 3568862 3578665 PCT