Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00599 TTGGAAGTCAACTCCATTGTGAAAATGACAAGCACCAAATTGGAGTTGCATGTTGGGATTTTTGTCACCTGCGTCGTGATTCTTGCAGGGACTTTCTGTGTTGGAGATACTGATATGGTTGATGTTGGTGCAATCAATAGTCTATATGTTTCTCTGGGGTCGCCACCACTTCAAGGCTGGAAACCCGTGGGAGGAGATCCATGTTTAGAACTGTGGCAAGGTGTCGCTTGTGTCTTCTCCAACATAACTGCTATACACCTTGGAAGCATGAATTTGGGTGGACAGCTGGGCAGCAATTTGAATTTCCCATCCATTTTAGAGTTGGATCTTAGTAACAACCACATTGAAGGGCCTATTCCATTTACTCTGCCCCCTACTCTGCGGAGCTTGTCTCTCATGGGAAATCGATTAAATGGAAGCATTCCGGATGCCTTGTCCTTATTAACTCAGCTGTCAAACTTGGATTTGTCAAATAATAACTTGAGTGGTCAGCTGCCTTCCTCAACAGGGAGTTTATCATCTCTTAACACATTGCACTTGCAAAATAATCAACTTTCGGGGACCCTTTACGTGTTGCAAGACCTGCCTCTTCAAGACCTGGATATAGAGAACAATTTATTCTCTGGGCCAATTCCTCCAAAATTGTTGTCTATCCCTAATTTCAGTAAAAATGGGAATCCGTTTAATACTACTATCATTCCATCACCTCCTCTTGCAGCCCCTGCATCAGTAGCTATGGTTCCATCCCCTCAAGAATCGCCTTGGAAAGTGGCATATGGTCCTTCTGCCCTAACAGCACGAGTGCCTGCAAGTGCTAGGAGGTCTTTTATGGCTAAGAGCATAATCTGGATTGCTGGTGCAGGTCTTTTTGTATTCATTGTATTGGGAGTTTGTCTTCTAATGTTGTGTTGCATTAAGAGGAGGCCGGAGAAGAAAAATGCTAAGAAACTTGATGATGTGGGCGTGTTTGGGGGACCTTTGAATAAATCTGCATGCAATGATTCTGCTTTTGGAGCAACTAACCAAGAGGAGAAGGGTAAATGTGAAGTACCAAATAGAAGCACAAATTCGATTCCTAAGGTTCAAGATGAAGGAGACATACATGTGAAAGTAGTATCTGCAACTTCAGAATGCAATAATGGTCATCAATCAATGAACACCGGAGGGGCTTCCAAACGTTCACCCCTGCAGCCACCACCAAAACATTCTTTCCCAACCATTTCTGGTGAGAAGATCACTATCAGTCCCGCTACAACTACCAAAGAAACTGAAAAACAAGTCATGACAAATTTCATCGAAGTTTATGCTATTGCATTGCTTCAACAATATACTAATAACTTTTCCCAAGAAAACTGCATTGGGGAAGGCACACTAGGACCGGTTTATCGGGCTGAACTCCCTGATGGAAAGCTATTGGCAGTGAGGAAACTGGATGCTACTGCTTCCATGGGGCAGAGTCATGAGCAATTTCTTCAATTGGTATCCAGCATCTCCAATATTCAGCATGCAAATATTGCAAGACTTGTAGGCTACTGTGTTGAACATAGCCAACGATTACTTGTATATGAGTATTGCAGTAATGGGACCCTACATAATGTATTGCATGGGGATGATGATCAGCGAATCAAACTTCCATGGAATGCACGCATTCGAGTGGCACTTGGAGCTGCCAGAGCTTTAGAGTACCTGCATGAGAACTTTAGGCCACCTATTGTGCATCGAAATTTTAGGTCTAATAATGTTCTTCTGAAGGACAATTTGGAAGTGTGCATCTCTGATTGTGGATTAGGGCCATTGTTATCTTCTGGCTCTACGGGTCAGTTATCAGGACGCCTCCTTACTGCTTACGGTTACAGTGCTCCAGAATTTGAGTCTGGAAGTTACACACAGCAAAGTGATGTCTTCAGTTTTGGTGTTGTAATGTTAGAACTCCTCACTGGACGAAAATCTCATGACAAGTCCCGGCCTCGTGCAGAGCAATTTTTGGTGAGATGGGCTGTCCCTCAACTCCATGACATTGATACATTGTCAAAAATGGTTGATCCCTGCTTGAACGGAGCCTATCCTATGAAGTCCTTGTCGCGTTTTGCAGATATTGTTTCTTCATGTCTACAGGTAATCTAA 2124 0.4331 MEVNSIVKMTSTKLELHVGIFVTCVVILAGTFCVGDTDMVDVGAINSLYVSLGSPPLQGWKPVGGDPCLELWQGVACVFSNITAIHLGSMNLGGQLGSNLNFPSILELDLSNNHIEGPIPFTLPPTLRSLSLMGNRLNGSIPDALSLLTQLSNLDLSNNNLSGQLPSSTGSLSSLNTLHLQNNQLSGTLYVLQDLPLQDLDIENNLFSGPIPPKLLSIPNFSKNGNPFNTTIIPSPPLAAPASVAMVPSPQESPWKVAYGPSALTARVPASARRSFMAKSIIWIAGAGLFVFIVLGVCLLMLCCIKRRPEKKNAKKLDDVGVFGGPLNKSACNDSAFGATNQEEKGKCEVPNRSTNSIPKVQDEGDIHVKVVSATSECNNGHQSMNTGGASKRSPLQPPPKHSFPTISGEKITISPATTTKETEKQVMTNFIEVYAIALLQQYTNNFSQENCIGEGTLGPVYRAELPDGKLLAVRKLDATASMGQSHEQFLQLVSSISNIQHANIARLVGYCVEHSQRLLVYEYCSNGTLHNVLHGDDDQRIKLPWNARIRVALGAARALEYLHENFRPPIVHRNFRSNNVLLKDNLEVCISDCGLGPLLSSGSTGQLSGRLLTAYGYSAPEFESGSYTQQSDVFSFGVVMLELLTGRKSHDKSRPRAEQFLVRWAVPQLHDIDTLSKMVDPCLNGAYPMKSLSRFADIVSSCLQVI 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00599 707 PRINTS Leucine-rich repeat signature 151 164 - -
Vimu2g00599 707 PRINTS Leucine-rich repeat signature 172 185 - -
Vimu2g00599 707 Pfam Protein tyrosine and serine/threonine kinase 450 653 IPR001245 GO:0004672|GO:0006468
Vimu2g00599 707 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 29 705 IPR046959 -
Vimu2g00599 707 SUPERFAMILY Protein kinase-like (PK-like) 428 705 IPR011009 -
Vimu2g00599 707 MobiDBLite consensus disorder prediction 378 393 - -
Vimu2g00599 707 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 150 239 - -
Vimu2g00599 707 Gene3D Phosphorylase Kinase; domain 1 410 524 - -
Vimu2g00599 707 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 38 149 - -
Vimu2g00599 707 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 525 706 - -
Vimu2g00599 707 Gene3D Transferase(Phosphotransferase) domain 1 525 706 - -
Vimu2g00599 707 MobiDBLite consensus disorder prediction 378 410 - -
Vimu2g00599 707 SUPERFAMILY L domain-like 54 219 - -
Vimu2g00599 707 ProSiteProfiles Protein kinase domain profile. 447 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00599 707 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 413 524 - -
Vimu2g00599 707 Gene3D Ribonuclease Inhibitor 44 237 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00599 Vimu-Chr2 3519031 3524548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00599 31 705 Strubbelig Receptor Gene Family AT4G03390 49.174 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vimu2g00599 PK_Tyr_Ser-Thr 6.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00599 - - gmx:100793423 1147.11