Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00581 ATGAATGACCTATTTTCAAGCTCCTTTAAACAATACAGTGAAATGAATAATGAGGCTCAATATGACGTGGAGGCTGGAAAGGAAAATGTTAACCTTGATAAGTTCTTTGATGAGGTGGAGAATGTGAAGGAAGACATGAGATCAGTCGAGAAGTTGTATAGAAAATTGCAAGAGTCCAATGAAGAGAGCAAGATCGTCCATAACGCTAAAACCATGAAAGATCTTCGAGCCAAAATGGATCAAGATGTTCAACAGGTTCTCAAACGGGTTAAAATGATAAAGGGCAAGCTTGAAGCTTTGGAACGTTCAAATGCAGCCAATAGAAACCTCCCAGGATGTGGTCCGGGTTCCTCCACAGATCGAACCAGAACCTCAGTGGTCAGTGGCTTAGGGAAGAAACTGAAGGACATGATGGACGATTTTCAAGGGCTGAGAGCAAGAATGCAGAACGAGTACAAGGAAACCGTGGAACGTAGGTACTTCACCATAACAGGAGAGAAGGCCGATGAAGATACCATTGAGAACTTGATATCAAGCGGTGAAAGTGAAAGTTTTCTTCAAAGGGCAATTCAAGAACAGGGTAGAGGTCAGATAATGGACACCATATCAGAGATTCAAGAGAGACATGATTCTGTTAAGGAGATAGAGAAGAACTTGATGGAGTTGCATCAGGTGTTTTTGGACATGGCAGCTCTTGTAGAGTCTCAAGGTCAGCAACTAAACAACATTGAGAGTCATGTTGCACATGCAAGTTCTTTTGTGAGAAGAGGCACAGAACAACTTCATGAAGCCAGAGAGTATCAAAAGAGTTCCAGAGAATGGACTTGTTATGCCATTCTTCTTGGCATTGTTCTTGTCATTGTCCTCTTGTTTCCTCTCTTGACATCACTTTTGCCTCACTTGTTGTATTGA 912 0.4189 MNDLFSSSFKQYSEMNNEAQYDVEAGKENVNLDKFFDEVENVKEDMRSVEKLYRKLQESNEESKIVHNAKTMKDLRAKMDQDVQQVLKRVKMIKGKLEALERSNAANRNLPGCGPGSSTDRTRTSVVSGLGKKLKDMMDDFQGLRARMQNEYKETVERRYFTITGEKADEDTIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDSVKEIEKNLMELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLHEAREYQKSSREWTCYAILLGIVLVIVLLFPLLTSLLPHLLY 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00581 303 Gene3D - 193 294 - -
Vimu2g00581 303 Coils Coil 32 62 - -
Vimu2g00581 303 SMART SynN_4 27 153 IPR006011 GO:0016020
Vimu2g00581 303 CDD SynN 32 189 IPR006011 GO:0016020
Vimu2g00581 303 SMART tSNARE_6 197 264 IPR000727 -
Vimu2g00581 303 MobiDBLite consensus disorder prediction 106 125 - -
Vimu2g00581 303 Pfam SNARE domain 239 290 IPR000727 -
Vimu2g00581 303 Coils Coil 83 103 - -
Vimu2g00581 303 PANTHER SYNTAXIN 24 287 IPR045242 -
Vimu2g00581 303 Gene3D - 28 161 - -
Vimu2g00581 303 Pfam Syntaxin 34 237 IPR006011 GO:0016020
Vimu2g00581 303 SUPERFAMILY t-snare proteins 30 257 IPR010989 GO:0016020|GO:0016192
Vimu2g00581 303 ProSitePatterns Syntaxin / epimorphin family signature. 208 247 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vimu2g00581 303 CDD SNARE_syntaxin1-like 201 261 - -
Vimu2g00581 303 MobiDBLite consensus disorder prediction 110 125 - -
Vimu2g00581 303 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 29 159 - -
Vimu2g00581 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 202 264 IPR000727 -
Vimu2g00581 303 FunFam Syntaxin 132 195 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00581 Vimu-Chr2 3404456 3405367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00581 1 302 SNARE and Associated Proteins AT1G61290 77.558 2.30e-176 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00581 K08486 - gmx:100818999 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03524 11 56686764 56687678 Vimu2g00581 2 3404456 3405367 PCT