Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00580 ATGAACAGTAGAGATCAGGCTGCGCAAACCGTTGCGGTTGTGGATTCGTTGGGGTTCAGAGCCGCTATGGCTTCGGCTTCTTCTTCTTCGTCCAAACTGTGCTTTAATTCTGACTGCAAAGAATTGAGGCCCGAAAGACCTAAGAAGGGGTGGAGGCTCCGTAGCGGGGAACTAGCCGAGCTCTGCGATCGATGCGGTGTGGACATTGTTGACGTAGTTATTGATACTGGGATATGGCACATGCAACTGGTCTTCGTGCTAGCCTATAAGTATGATAATGGAAACGTGACCGGTAGAGTCTCCGACGAGACAGTCGATCAAATGAGAGGTGAGCTCGACAGTGATGATTGCTCCATGTTACCAATTGTACCTAGCAGGAACATTGTGGGTTGTTTCTCTGCTTTTGAAGAAGGGAGGTTCTGTGAAATTTTCCACTCAAATGCTTCTGGTTGGAGGAGTTGTGAGACTTGTAGAAAGAGAGTTCATTGTGGATGTATTGTTTCAAGTCATTCCTTCATGTTGCTGGATCCCGGAGGGATTGAATGTTATGCATGTGCCCGCAAAAATATTATTATGCCTTCTAACCTGCCGTGGCCACAATCTTTTTCCCTTCAAAATCGTTTATCTGATAGACTTAGAGATCTATCTGCTAAAGGTTGGAATCAGTTGGCTGGATCGGGTCCTGTACCCTGGAAGCAAGCACCCAGTCTGTTCAATTCTGCTTCTTCGACCGACCTGATACCAGACGTGCCTTCTTTAGCTGAATTATCCAATAGCTTTGACAAAATGTATTGCAACGAAAGGTTACCTGCCTCAGCCTTGGAAAAGAAAATCGAGGATTATACTGGATTACCAGTTCATTGGAATGTTACAATTTGCCCACGGGAGATGAAGCTTATGAATGGAATGAGGAATGAGGACAAAGCAAGTTCATGTTTAAATATGTGTCAGCAGCCTTCTTCTATGAAGGAAGAGTCATCAACTCAACCATTTGGTTTGCCGGTGCCTAATTCATGCCAAAATGAAAGAAATGGTCAGCTTGGGGTAACTGGAAGTCACCCTCAACAAACTCCACCACCTCCAGGAAAGCATTTTAATGGCACTATGCATTTAGCACCTGACTCATCAGGTGAGGCTCAGGTTCGCAATGGGCGACCTCGAGCAGATGCCCGGGGAAGAAACCAGTTGCTGCCACGGTACTGGCCTAGGTGTACTGATCTTGAACTACAACAAATATCCATAGATTCAAATTCTGTAATTACTCCCTTGTTTCAGAAAACCTTGAGTGCAAGTGATGCTGGACGAATTGGGCGTTTAGTCCTACCAAAAAAGTGTGCCGAGCCTGAAGGATTGCCGCTTAAAATCCTTGATGCAAAGGGAAAGGAATGGATATTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCGTGCATACAGTCCATGCAGTTACAGGCTGGTGACACTGTAACATTTAGCCGTTTAGAGCCAGAGGGAAGGTTGGTTATGGGATTTAGAAAGGCTTCGAGTGCTGTGCCATCCGACCAGGACAATGAAACCAATAAGTCTGGAAATGGATTTTCTGCACATGGTGAAGTTGAATTGGCTGATCCCAATTCATGGTCTAAAGTTGACAAGTCAGGATACATAGCAAAAGAAGCACTGGGGAGCAAATCATTAATATCTAGAAAAAGAAAAAGTGGCATATTGGGCTCAAAGAGTAAACGTCTAAGAATTGAAAATGAGGATTTAATAGAGCTGAAGATTACGTGGCAAGAAGCTCAAGGTCTGCTCCGGCCCCCTCCTAGCCACATTCCGAGCATTGTTGTGATTGAAGGTTTTGAATTTGAGGAATACGAGGAAGCTCCAGTGCTTGGGAAGCCAACAATTTTTACCAGTGATAATGTGGGTGAAAAGATCCAGTGGGCTCAATGCGAAGATTGTCTCAAGTGGCGCAAATTACCAGCAAGTGCGCTTCTTCCATCAAAATGGACGTGTGCTGATAATTCATGGGATCCAGAAAGATCTTCTTGTTCAGCTGCACAAGAGCTGACAGCAGAGCAACTTGAGAATTTGCTACCTCCTTGTAATTCAGCTATTCCCAAGAAAATGAAGGCTGCCAAACAGGATCCTGATAATGCTGAAGCTTTGGAGGGACTCGACACCCTCGCAAATTTAGCTATCCTGGGAGAGGGTGAAGCACTCCCAGCATCTGCCCAGGCCACAACTAAGCACCCGCGCCATAGACCTGGCTGTTCTTGCATCGTTTGCATTCAACCACCCAGTGGAAAGGGCCCCAAGCATAAGCAGACATGTACGTGTAATGTATGCTTAACAGTGAAGCGACGTTTCCGTACCCTTATGTTACGACGTGAGAAGAAACAATCAGAAAAAGAAGCAGAGACAACTCGTAAAAAGCAACAGCAACAACATTCTCAACCACTACCTTCGTCTGAAATTTTGCTTGACGAAGATTCATTACCCTGTAGTAACACAGGTGACAGTAGCCCGAACCAGAACAAAGAGGGTAATGATGGTTCTGATGATGATCCTAACAGAATAAAATCATCTGCTTCACCATTCAAAGGCCAAATTGACCTCAATATACAGCCAGAGCGAGAAGAAGAATTGTCCCCTGGTTCAGATTCTGGTGGCATGATGAAGTTGCTCCATGATGCTACTGAGAGGTATTTGAAGCAGCAGACTGTGAACTCCGGTACGGGAGATTCTGCTGGCAGTCAGTCACAGCTGGTAGGAGATGCAATGAGGGAAGATAAACTTAGCAATGGTGTTAACCATGGCAGTAGTAGTCATAGTACTGATAAGGAACATGCTCAATCTTTGTCTATGAATGAAATGGAAAACTATGAAATGCAGCTGAATTGGGGTAGTGGGTTGAAGCTGTTTAGTTTCTTTCGAGAGCTCACCGTGCCACCTGATTTCAACAACGTTGGAAATGATGCCATTGAGGAAGAAGTTGAATATGCTTAG 3015 0.4488 MNSRDQAAQTVAVVDSLGFRAAMASASSSSSKLCFNSDCKELRPERPKKGWRLRSGELAELCDRCGVDIVDVVIDTGIWHMQLVFVLAYKYDNGNVTGRVSDETVDQMRGELDSDDCSMLPIVPSRNIVGCFSAFEEGRFCEIFHSNASGWRSCETCRKRVHCGCIVSSHSFMLLDPGGIECYACARKNIIMPSNLPWPQSFSLQNRLSDRLRDLSAKGWNQLAGSGPVPWKQAPSLFNSASSTDLIPDVPSLAELSNSFDKMYCNERLPASALEKKIEDYTGLPVHWNVTICPREMKLMNGMRNEDKASSCLNMCQQPSSMKEESSTQPFGLPVPNSCQNERNGQLGVTGSHPQQTPPPPGKHFNGTMHLAPDSSGEAQVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAEPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAVPSDQDNETNKSGNGFSAHGEVELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSGILGSKSKRLRIENEDLIELKITWQEAQGLLRPPPSHIPSIVVIEGFEFEEYEEAPVLGKPTIFTSDNVGEKIQWAQCEDCLKWRKLPASALLPSKWTCADNSWDPERSSCSAAQELTAEQLENLLPPCNSAIPKKMKAAKQDPDNAEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEKEAETTRKKQQQQHSQPLPSSEILLDEDSLPCSNTGDSSPNQNKEGNDGSDDDPNRIKSSASPFKGQIDLNIQPEREEELSPGSDSGGMMKLLHDATERYLKQQTVNSGTGDSAGSQSQLVGDAMREDKLSNGVNHGSSSHSTDKEHAQSLSMNEMENYEMQLNWGSGLKLFSFFRELTVPPDFNNVGNDAIEEEVEYA 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00580 1004 CDD B3_DNA 422 515 IPR003340 GO:0003677
Vimu2g00580 1004 MobiDBLite consensus disorder prediction 934 955 - -
Vimu2g00580 1004 MobiDBLite consensus disorder prediction 317 391 - -
Vimu2g00580 1004 MobiDBLite consensus disorder prediction 815 850 - -
Vimu2g00580 1004 MobiDBLite consensus disorder prediction 798 814 - -
Vimu2g00580 1004 Gene3D - 402 520 IPR015300 -
Vimu2g00580 1004 SUPERFAMILY DNA-binding pseudobarrel domain 421 515 IPR015300 -
Vimu2g00580 1004 ProSiteProfiles Zinc finger CW-type profile. 644 694 IPR011124 GO:0008270
Vimu2g00580 1004 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 31 919 - -
Vimu2g00580 1004 MobiDBLite consensus disorder prediction 519 535 - -
Vimu2g00580 1004 SMART B3_2 424 517 IPR003340 GO:0003677
Vimu2g00580 1004 MobiDBLite consensus disorder prediction 317 353 - -
Vimu2g00580 1004 Pfam B3 DNA binding domain 424 515 IPR003340 GO:0003677
Vimu2g00580 1004 MobiDBLite consensus disorder prediction 798 895 - -
Vimu2g00580 1004 Gene3D - 648 701 - -
Vimu2g00580 1004 ProSiteProfiles B3 DNA-binding domain profile. 424 517 IPR003340 GO:0003677
Vimu2g00580 1004 MobiDBLite consensus disorder prediction 516 539 - -
Vimu2g00580 1004 Pfam CW-type Zinc Finger 649 691 IPR011124 GO:0008270
Vimu2g00580 1004 Coils Coil 798 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00580 Vimu-Chr2 3391635 3403788 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00580 355 951 B3 DNA Binding Superfamily AT4G32010 45.765 2.62e-156 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu2g00580 B3 1.6e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00580 K09287 - gmx:100782114 1566.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00580 2 3391635 3403788 Vimu2g00580 2 3391635 3403788 ECH