LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu2g00577	ATGGATATATCTCATATCTTAGTCTTGCTTCCTGCTCAACAGGTTAGCGAAGAAGTAGAGTGTGCTTTAGCAAAATTAGTCCCTGCCAAGCTTAGTGGAAGGTCTTCTCCCAAGAGCATAGAAGGCCCTAATGACAGCAGTCTACAGTTACAATTCAGGAACAGGTTATCCCTTCCCCTCTTTACTGGTGGGAAAGTGGACGGAGAGCATGGCAGCGCCATACACATTGTTTTGATTGATACAATAACAGGGCATGTTGTTACATCTGGCCCAGCTTCGTGTGTCAAACTAGATGTTATTGTACTTGAAGGAGATTTCAATAACGAGGATGATGATAATTGGAGTGAAGAAGATTTTGATAGTCACGTAGTTAAAGAGCGGGAAGGAAAAAGACCTCTTCTGGCTGGTGATCTGCAAGTGACACTGAAGGAGGGTGTAGGAACATTGGGTGAGCTTACATTTACAGACAACTCTAGTTGGATAAGGAGTAGGAAGTTCAGGCTGGGGCTCAAAGTTTCCTCCGATTGTTATAAGGGAATGCGTATTCGTGAAGCCAAAACAGAGGCTTTCACTGTTAAGGATCATCTATACAAGAAGCATTACCCACCTGCCTTGAATGATGAGGTCTGGAGACTGGAGAAGATTGGAAAGGATGGTTCATTTCACAAAAGGTTAAATAAAGCAGGAGTATATACAGTTGAAGATGTCGTACGACTTGTGGTCAGAGATCCACAGAGATTGCGGAATATTCTCGGGAGTGGTATGTCAAATAAAATGTGGGATGTTCTTGTTGAGCATGCAAAGACTTGTGTTCTCAGTGGAAAACTCTATGTATATTATCCCGATGGTGCAAGGAATGTTGGTGTTGTTTTCAATAACATCTATGAGTTAAGTGGTCTAATTACCAATGACCAATATTACTCTGCTGATTCTCTCTCCGACAGTCAAAAGGTTTATGTGGACACACTGGTGAAGAAGGCATACGAGAATTGGATGCATGTTATTGAGTATGATGGCAAGTCTCTGCTAAATGCCAATCAGAATATGACTTTGAGCACCTCCCAACCTCTGGCTGCAGGGGGTTCCCATGATTATTCAATTTCAAACTCCATTGATCAGCAGACCTGCATCCGAAGTCTTCCAGTTCCTGTAACTACTGGGCAGCCTTCAATGGATCCAGCCATAGCAGTCGGAGGTATATTGTTCCAACTGTAA	1215	0.4288	MDISHILVLLPAQQVSEEVECALAKLVPAKLSGRSSPKSIEGPNDSSLQLQFRNRLSLPLFTGGKVDGEHGSAIHIVLIDTITGHVVTSGPASCVKLDVIVLEGDFNNEDDDNWSEEDFDSHVVKEREGKRPLLAGDLQVTLKEGVGTLGELTFTDNSSWIRSRKFRLGLKVSSDCYKGMRIREAKTEAFTVKDHLYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGVYTVEDVVRLVVRDPQRLRNILGSGMSNKMWDVLVEHAKTCVLSGKLYVYYPDGARNVGVVFNNIYELSGLITNDQYYSADSLSDSQKVYVDTLVKKAYENWMHVIEYDGKSLLNANQNMTLSTSQPLAAGGSHDYSISNSIDQQTCIRSLPVPVTTGQPSMDPAIAVGGILFQL	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu2g00577	404	Pfam	Calmodulin binding protein central domain	204	270	IPR046830	-
	Vimu2g00577	404	Pfam	Calmodulin binding protein C-terminal domain	275	337	IPR046829	-
	Vimu2g00577	404	Pfam	Calmodulin binding protein-like N-terminal domain	48	195	IPR046831	-
	Vimu2g00577	404	PANTHER	OS02G0177800 PROTEIN	12	362	IPR012416	GO:0005516

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu2g00577	Vimu-Chr2	3371975	3376267	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu2g00577	15	347	Calmodulin-binding Proteins	AT2G18750	73.512	0.0	517

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu2g00577	-		-	gmx:100802994	710.679

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu11g03517	11	56650317	56655514	Vimu2g00577	2	3371975	3376267	PCT