Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00570 ATGGCTGACACCGCCGGCTCCGGTCACCGGCGGGTTATCGCGCTCATCTCTTCCCTTATCTCCCTCTCTCTCTCCATCAGAGTCTTCGCCGGAAAGTGGCAACTTATTCGGAGTAGGCTGGAGGAGCTCTGTTCGGCATTCGTCGCCGGCGACTCCACTTCGCTGTCAAGCGAGATCCCGGAGATAACAGGCACGGTGGAGGAGTGCCACGAGCTGGCAAGGCGGTGCTTGGATCTGTCCTACAGCGGGAAGCTCTTGATGCAGAGCGACTTAGACGTGACTTTGGGGAAGTTGGAAGCGCACGTGAAGAAGCTATCTGAGATATTCAAGAAGCGTGTGTCGATGCATGGCTACGCTGTTGTGGTTTCACGGCCTGGTTTTGGAGCTTGCAAAGATGACATGAGGTTCTACTTAAGGGATTTAATGACTCGAATGAAGGTTGGCGATTTGGGTATCAGGAAGCAAGCGTTGATGAACCTGCATGAAGTTGTTGTGGAGGATGATAAGTATGTGAAATTGGTTGTTGAGGCTTCTGAGTTTGTTCACTTGTTGGTGGATTTTCTGGGTTGTGATGAGGTTGAGATTGTTGAGGAGGCAGCCAAGGTTGTTTCTGTCGTTGCAGGTTTTGATTATTATAAAGGGGTTTTGGTTGGTGCTGGAGTTATCGGTCCTTTAATTCGGATTTTGGAATGTGGGAGTGAAGTGGGAAAGATTGCTGCTGTGAGATGTTTGTGTAGACTGACTGAGAATTCGGATAATGCTTGGAGTGTTTCAGCTCATGGAGGTGTAACAGTCTTGTTGAGGATTTGTGAGAGCGGAGAGTGTAAAGGAGAATTGATTGGTCCTGCTTGTGGGGTGTTGCGGAATCTTTGTGGGGTTGAGGAAATCAAGAGGTTTATGGTTGAGGAGGGTGTGATTTCCACGTTTGTGAAGCTTGTGAGGTCAAAGGATGAAGTAGTTCAAGTTAGTTCTATTGAGTTGATTCAAAACATTGCTTCTGGTGATGAGTTGGTTAGGCAGATGGTGGTTAGAGAAGGAGGGGTTCGTGTTCTTCTGCGTGTTTTGGATCCATTGTGGACGTGCTCGTCTAAAACAAGAGAGGTTGTGATGAGGGGTATTGAGAATTTGTGTTTTTCTTCGTCCAGTTGTGTTAGTCTTTTGCTGAGTTATGGCTTTGTGGATCAGTTGATGTATTATGTTCGAAATGGGGAGGTATCGATTCAGGAGTTGGGGTTGAAGGTAGCGTTTAGATTGTGTGAAGCATCGGAGGAGGCCAAGAAGGCATTAGGTGATGCCGGCTTCATGGCCGAGCTTGTGAAGTTTCTAAATGCGGAATCGTTTGAAGTTCGTGAAATGGCAGCAGAGGCACTCTCTGGCATGGTTACGGTGGCTAAAAATAGGAAGAGGTTTGTGCAGGATGACCAAAACATTACCCTTCTTCTGCAATTGCTGGATCCAGGGGAGGGAAATTCTGGTAATAAAAAGTTGTTGATCTCTATCTTGATGTCACTAACAAGCTGCAACAGTGGCAGGAAGAAAATTGTGAGTTCCGGGTATGCCAAAAACATAGAGAGGCTTGCAGAAGCTGAGGTTTCTTCCGATGCCAAGAGGCTCGTCAGGAAGCTATCCACAAACCGGTTCCGCAGTATGTTGAGTGGAATCTGGCACTCTTGA 1674 0.4743 MADTAGSGHRRVIALISSLISLSLSIRVFAGKWQLIRSRLEELCSAFVAGDSTSLSSEIPEITGTVEECHELARRCLDLSYSGKLLMQSDLDVTLGKLEAHVKKLSEIFKKRVSMHGYAVVVSRPGFGACKDDMRFYLRDLMTRMKVGDLGIRKQALMNLHEVVVEDDKYVKLVVEASEFVHLLVDFLGCDEVEIVEEAAKVVSVVAGFDYYKGVLVGAGVIGPLIRILECGSEVGKIAAVRCLCRLTENSDNAWSVSAHGGVTVLLRICESGECKGELIGPACGVLRNLCGVEEIKRFMVEEGVISTFVKLVRSKDEVVQVSSIELIQNIASGDELVRQMVVREGGVRVLLRVLDPLWTCSSKTREVVMRGIENLCFSSSSCVSLLLSYGFVDQLMYYVRNGEVSIQELGLKVAFRLCEASEEAKKALGDAGFMAELVKFLNAESFEVREMAAEALSGMVTVAKNRKRFVQDDQNITLLLQLLDPGEGNSGNKKLLISILMSLTSCNSGRKKIVSSGYAKNIERLAEAEVSSDAKRLVRKLSTNRFRSMLSGIWHS 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00570 557 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 261 305 IPR000225 GO:0005515
Vimu2g00570 557 SUPERFAMILY ARM repeat 139 538 IPR016024 -
Vimu2g00570 557 Gene3D - 138 546 IPR011989 -
Vimu2g00570 557 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 304 347 IPR000225 GO:0005515
Vimu2g00570 557 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 10 556 - -
Vimu2g00570 557 SMART arm_5 335 378 IPR000225 GO:0005515
Vimu2g00570 557 SMART arm_5 250 292 IPR000225 GO:0005515
Vimu2g00570 557 SMART arm_5 293 333 IPR000225 GO:0005515
Vimu2g00570 557 SMART arm_5 422 462 IPR000225 GO:0005515
Vimu2g00570 557 SMART arm_5 167 208 IPR000225 GO:0005515
Vimu2g00570 557 SMART arm_5 209 249 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00570 Vimu-Chr2 3311559 3313232 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00570 109 409 U-box Gene Family AT2G23140 23.102 7.20e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00570 - - gmx:100783537 929.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03498 11 56373515 56375064 Vimu2g00570 2 3311559 3313232 PCT