Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00567 ATGGGTAGAGCTCCTTGTTGCGAAAAGAATGGCCTCAAGAAAGGACCATGGACCACTGAGGAGGATCAGAAACTCGTTGATTACATTCAGAAACATGGATATGGCAACTGGAGGACACTCCCAAAGAATGCTGGGTTGCAGAGATGTGGAAAGAGTTGCCGTCTTCGTTGGACAAACTATCTCCGACCAGATATAAAGCGCGGTCGGTTTTCGTTTGAGGAGGAAGAGACCATAATTCAGCTACATAGCATTCTTGGCAACAAGTGGTCTGCAATTGCTTCTCGCTTACCGGGAAGAACAGACAATGAAATCAAAAACTATTGGAACACACACATTAGAAAAAGGCTTCTGAGGATGGGAATTGACCCTGTCACACACAGTCCTCGACTTGATCTATTGGACATCTCTTCCATTCTAAACGCATCTTTCTACGGTTCATCACAAATGTTCCTTGGCATGCAGCCTTCTATGGTGAACCCCCAGCTTTTAAGGTTGGCTTCTTCACTCTTCTCCTCCTCACACCAACACAAACACCTTGAAATGTGTGCTCCAAAGGGTCAACAGAACCAGCTTTGCGATCCACAAGTTCAGAATCATGTTCCACACTTGGCACAATTTCAAGATCCAGTTCAAGAGGTGCCTGCATGCAGCACCACCGTGTTTGGCACCCCTTGTGTTTCATTGCCTCTCTCTCAACCACAGTTGGTTGAGCCCCATAATGTGGACCCATATCCATCATCAAGTTTCACAGACTTCGCTTACCAACAACATTCCCATGATGATCAGATAATAAGTGATTGGCACAAAGATGGGGTTGCTTTAAGCACTTTAACAGATGACTATGTCCCTCAGTTATCTGGCTATAATTATTACAGTTCTGATTCTCAAGATCTCGTGTATCCTCCATTGTCCGAACCTTCAACTTTCCATTCCAATAACAGCCATCAGAACTTCAGCTTCGCTTCAGTTCTATCCACGCCTTCGTCAAGCCCCACACCCTTGAATTCAAACTCCACGATAATCAACGGGAGCAACACAGAAGACGAGAGAGACCAGAGCTATGACAGTAGCAGCTTGTTGAAATTTGAAATCCCAGATATTTTAGATGTGAATGAGTTCATGTAA 1125 0.4462 MGRAPCCEKNGLKKGPWTTEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDISSILNASFYGSSQMFLGMQPSMVNPQLLRLASSLFSSSHQHKHLEMCAPKGQQNQLCDPQVQNHVPHLAQFQDPVQEVPACSTTVFGTPCVSLPLSQPQLVEPHNVDPYPSSSFTDFAYQQHSHDDQIISDWHKDGVALSTLTDDYVPQLSGYNYYSSDSQDLVYPPLSEPSTFHSNNSHQNFSFASVLSTPSSSPTPLNSNSTIINGSNTEDERDQSYDSSSLLKFEIPDILDVNEFM 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00567 374 Gene3D - 69 116 - -
Vimu2g00567 374 CDD SANT 69 112 IPR001005 -
Vimu2g00567 374 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vimu2g00567 374 CDD SANT 16 61 IPR001005 -
Vimu2g00567 374 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vimu2g00567 374 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu2g00567 374 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu2g00567 374 MobiDBLite consensus disorder prediction 322 347 - -
Vimu2g00567 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu2g00567 374 SMART sant 13 63 IPR001005 -
Vimu2g00567 374 SMART sant 66 114 IPR001005 -
Vimu2g00567 374 FunFam MYB-related transcription factor 13 66 - -
Vimu2g00567 374 FunFam Transcription factor MYB39 69 130 - -
Vimu2g00567 374 MobiDBLite consensus disorder prediction 322 356 - -
Vimu2g00567 374 Gene3D - 13 66 - -
Vimu2g00567 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu2g00567 374 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu2g00567 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00567 Vimu-Chr2 3287290 3288645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00567 1 374 MYB Transcription Factor Family AT4G21440 51.786 6.02e-112 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu2g00567 Myb_DNA-binding 9.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00567 K09422 - gmx:778071 622.083