Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00563 ATGGGGAAAAAATCGAAGCCGGAAGAGGAAGGAAAAGCGGTACCGGAGCATCTGCGGTGCAACCGGTCGGACGGGCGGCAATGGCGGTGCCGGCGGAGAGTGATGGAAAACCTAAAGCTCTGCGAGATTCACTACCTGCAAGGTCAGCATCGGCAGCACAAGGAAAAGGTTCCGGAGTCTCTGAAGCTTCAGAGAAAGAGCCAAAACGATGCCGTTGAGACTCGTATTGGGGCGAAGCGGAAGGGCAACTCGAGAGAGGCATTTGTCAATAGGAGGAACCAATTGGAGCTCATAAGGATGGTTCTGCAGAGAGAGGTTGAGAAGAAGAAGAAGAAGGAATCGCAATTGAATTTGCCTTTGAATTTGAATTTGCACTCCAATCACGACTTGAGGAGGGAGTTGCCGAACGGGGTTATGGCTATTGCTTCCGCTTCAATGCCCAATGTGGCTTCTTCTTCTCGTTACTTCAGGTCCAAGAATGTCGAGAGGGGTTCTGGTGGCAAGTTGCAGGTTGTCCAGTGTGGACGAAATTTGAAGAAGGGGAGGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCTTGCAGTCTTATAAGGTATTTTGACACTCAAAATGAGGTTAAGATGGCATGTCCAGTTTGCCGAGGAACTTGCACCTGTAAAGATTGCTTGGCACCTCAATATGAAGACAGTGAAAGTAAGGAACATTTAGCTGGTAAAAACAGAGTTGATAGGATATTGCATTTTCATTATTTGGTCTGTATGCTCCTTCCTGTACTGAAACAAATAAAAGAAGATCACCACGTGGGTGTAGAAACAAAAGCGAAAATTAAAGGGAAGAAAATGAATGATATTATTATCAAACCGGTCAAGTTTGGCTGCAATGAGAAAAATTACTGCAATCATTGCAAAACACCCATTTTGGATCTTCATAAAAGCTGCCTTAGTTGTTCATACAGTCTTTGCTTAAGTTGTTCTCATGCATTAAGTCAAGGAAGAATCTCTGAACAAAACAACTCTTCTATATCCAAGCAACCTGACAGGATAAGAGCTTGCATTTCTGGCGAAAGGTACCTATTGGATGAGAAGGCCATTTCTAATGGCAATTTAACTGATACCTCAATGTTAACTGAGTGGACAAGTTGTAATGGTGCTGCCATAGTATCATGCCCACCTACAAAGCTTGGTGATTGTGGTAATAGCCACCTTGATCTGAACTACGTTTTTCCCTTAAGTTGGATCAAAGAAATGGAAGCAAAGGCAGAAGAAATAATTTGCAGCTATGACTTTCCGGAAACTCTGGATAAAAGTTCAAGTTGCCCAATGTGTGTCGACAAAGATCATAAAACTAGCAGATACAAACAGCTACCGGAAGCAGCTCAAAGGGAAGATTCTAATGATAATTACTTATTTTATCCTACAGTTTTGGACATCGGTAGCAATCATTTTGAACACTTTCAGAAACATTGGGGAAGAGGCCATCCTGTAGTAGTGAGAGATGTGCTGCAAAGTACACCAAACCTTAGTTGGGATCCACTGTTCATGTTTTGCACTTATCTTGAGAGGAGCATGACAAGATATGAGAATAACAAGGACTTACTTGAAGCTTGTTTGGATTGGTTTGAGGTGGAGACTAACGTTAGACAGCATTTTACCGGGTCTCTTAAATGTCAACCAAAGAAAAATACTTGGCATGAGATGCTGAAACTTAAAGGGTGGTTGTCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTGCCGAAGTAATTGATGCTCTTCCAATTCAAGAATACATGAATCCCTCGTCAGGTCTTTTGAATTTAGCTGCAAATTTGCCACAGGGGAGTACAAAGAACGACATAGGACCATATGTTTATATTTCATATGGCTGTGCTGATGATGAAGCTGAGTCCGTGACAAATCTCTGTTATGACTCATATGACATGGTTAACGTTATGGCACATTCCATGGACATCCCTCTGTCCACTGATCAGCTATCTAGAATAAGCAAGTTATTAAAAAAGCACAAAGTTCTATGTCAAACGGTGTCATCTAAAACTACTACTGAGCACGCAGAAGACAGGGAACAAAATGAAATGCAAAGTTTGGTAAGAGAAGGAACTGATTTTTTAAGGAGAGTCAACAGAACATCTTGCATCTCTAGGGAAGCGAAAACAATATGCAATCAGAATTTAGACAACAATATTTCCGGTGATAAAGAATGTGGTTCCTATTCTGAAACTGAAAAGGCACATTGCTCTTTATCTTTCCACAGCATAGTTCTAAGTTCTGAGATGTTTCCAGATCATAATCTTAGAAATTCCTTTGAAAACTCAGACAAAGATAAAAGGAAGAAGGCTACAGGGAATGCTGGTGCTCAATGGGATGTTTTTCGAAGGCAAGACGTGCCAAAGCTCTTAGAATACCTTAAAATACACTCTGATGAATTTTCTTATACTAGTGAACATCACGAGAAGATGGTTCATCCACTTCTAGATCAGAGCTTCTTTCTTGACAATACTCACAAGATGAGACTTAAGGAGGAATTTAAAATTGAACCATGGACTTTTGAGCAACGTGTTGGTGAAGCTGTCATCATTCCTTCTGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTTCGTGTGGAATTGGAATTTGTGTCCCCTGAGAATGTTGCTGAGTGTATCCAATTGATTGATGAGGTCCGGCTGCTTCCAGAAGACCACCCCGCAAAAGTAGAAAAACTGGAGGTGAAAAAAATGGCCCTGCATAGCATGAATACAGCAATAAAAGAAATATGTGAACTTACATGCAGAACATGA 2832 0.4128 MGKKSKPEEEGKAVPEHLRCNRSDGRQWRCRRRVMENLKLCEIHYLQGQHRQHKEKVPESLKLQRKSQNDAVETRIGAKRKGNSREAFVNRRNQLELIRMVLQREVEKKKKKESQLNLPLNLNLHSNHDLRRELPNGVMAIASASMPNVASSSRYFRSKNVERGSGGKLQVVQCGRNLKKGRRKKCHWCQRSDSCSLIRYFDTQNEVKMACPVCRGTCTCKDCLAPQYEDSESKEHLAGKNRVDRILHFHYLVCMLLPVLKQIKEDHHVGVETKAKIKGKKMNDIIIKPVKFGCNEKNYCNHCKTPILDLHKSCLSCSYSLCLSCSHALSQGRISEQNNSSISKQPDRIRACISGERYLLDEKAISNGNLTDTSMLTEWTSCNGAAIVSCPPTKLGDCGNSHLDLNYVFPLSWIKEMEAKAEEIICSYDFPETLDKSSSCPMCVDKDHKTSRYKQLPEAAQREDSNDNYLFYPTVLDIGSNHFEHFQKHWGRGHPVVVRDVLQSTPNLSWDPLFMFCTYLERSMTRYENNKDLLEACLDWFEVETNVRQHFTGSLKCQPKKNTWHEMLKLKGWLSSQLFKEQFPAHFAEVIDALPIQEYMNPSSGLLNLAANLPQGSTKNDIGPYVYISYGCADDEAESVTNLCYDSYDMVNVMAHSMDIPLSTDQLSRISKLLKKHKVLCQTVSSKTTTEHAEDREQNEMQSLVREGTDFLRRVNRTSCISREAKTICNQNLDNNISGDKECGSYSETEKAHCSLSFHSIVLSSEMFPDHNLRNSFENSDKDKRKKATGNAGAQWDVFRRQDVPKLLEYLKIHSDEFSYTSEHHEKMVHPLLDQSFFLDNTHKMRLKEEFKIEPWTFEQRVGEAVIIPSGCPYQIRNPKCCVRVELEFVSPENVAECIQLIDEVRLLPEDHPAKVEKLEVKKMALHSMNTAIKEICELTCRT 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00563 943 Pfam JmjC domain, hydroxylase 793 889 IPR003347 -
Vimu2g00563 943 Pfam WRC 15 56 IPR014977 -
Vimu2g00563 943 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 15 940 IPR045109 GO:0032454|GO:0033169
Vimu2g00563 943 SUPERFAMILY Clavaminate synthase-like 482 928 - -
Vimu2g00563 943 Coils Coil 92 112 - -
Vimu2g00563 943 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Vimu2g00563 943 Gene3D Cupin 477 914 - -
Vimu2g00563 943 SMART cupin_9 583 906 IPR003347 -
Vimu2g00563 943 ProSiteProfiles JmjC domain profile. 602 906 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00563 Vimu-Chr2 3265207 3271029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00563 11 54 GRF Transcription Factor Family AT2G22840 45.455 3.47e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vimu2g00563 JmjC 3.5e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00563 K15601 - gmx:100802129 1557.73