Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00558 ATGGAGTTTGATCTTGAAGATCCACTAGTCAGCTTGGGAGAAGAGCAACTCTTTACTGTATCAGAACTCTTTGCCTCCGAATCAGATCACATGCCCTCACCAAACTACTTAAGTCTAACACATTTTCACGTTTTCTGTTTTGAGGCCATATCTCTTATTCTTCAGGTTCAGCTTTCTTACAAACTAGACCCTTTTGTAGCTTACCTTGCTATAAATTACATGCATCGTTTCATGTCAAGCCAGGAAATTCCGAAGGGGAATCCGTGGTATCTTAGGCTTGTTGTCGTATCGTGTCTCTCTCTTGCTTCAAAGATGAAAAACACGACTTTGCCATTTTTGGAAATGCAGAAAGAAGGTTGTAACTTTAAGGTTCAAAGTATTCAGAAAATGGAGCCTCTGATTCTCGGGGCACTGAAATGGCGTATGAGATCAATTACACCTTTTTCTTTCCTGCGCTTCTTCATCTCTTTAGCTGAAATTGAAGATCAATCACTGAAGCAAGCACTCAAAGAGAGAGCTTCTACTATAATCTTCAATGCTCAAAATGACATTAAGCTTTTAGAGTATAAGCCTTCAACTATTGCAGCAACTGCCCTCATCATTGCATCGCATGAACTACTCCCTCATCGATATTGTATTCTGAGAGCTTCAATTATATCCAGTGAGTACCTAGATGAGGAGACATTGTCCAAGTGCTTTGATTTGATGCAAGAGATGATAAGAACGGTGGCAAAAGAATTAGAGACAGAAAGATGGTTTTTAAGAACAGAAACTCCAGGGAGTGTGCTTGAGAGAAACACCAAACGACAAAGAATTTAA 819 0.3956 MEFDLEDPLVSLGEEQLFTVSELFASESDHMPSPNYLSLTHFHVFCFEAISLILQVQLSYKLDPFVAYLAINYMHRFMSSQEIPKGNPWYLRLVVVSCLSLASKMKNTTLPFLEMQKEGCNFKVQSIQKMEPLILGALKWRMRSITPFSFLRFFISLAEIEDQSLKQALKERASTIIFNAQNDIKLLEYKPSTIAATALIIASHELLPHRYCILRASIISSEYLDEETLSKCFDLMQEMIRTVAKELETERWFLRTETPGSVLERNTKRQRI 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00558 272 Pfam Cyclin, C-terminal domain 145 241 IPR004367 -
Vimu2g00558 272 Pfam Cyclin, N-terminal domain 24 142 IPR006671 -
Vimu2g00558 272 CDD CYCLIN_AtCycD-like_rpt2 145 236 - -
Vimu2g00558 272 Gene3D - 22 233 - -
Vimu2g00558 272 FunFam D6-type cyclin 33 140 - -
Vimu2g00558 272 Gene3D - 33 143 - -
Vimu2g00558 272 SMART Cyclin_C_2 145 260 IPR004367 -
Vimu2g00558 272 SUPERFAMILY Cyclin-like 20 142 IPR036915 -
Vimu2g00558 272 PANTHER CYCLINS 50 241 IPR039361 -
Vimu2g00558 272 FunFam D6-type cyclin 141 234 - -
Vimu2g00558 272 SMART cyclin_7 51 136 IPR013763 -
Vimu2g00558 272 SMART cyclin_7 149 238 IPR013763 -
Vimu2g00558 272 SUPERFAMILY Cyclin-like 125 253 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00558 Vimu-Chr2 3237167 3238494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00558 1 265 Core Cell Cycle Gene Families AT4G03270 38.929 3.12e-54 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00558 K18812 - gmx:100799985 427.557