Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00554 ATGAGGAAGTGTGATCTCTGTAACAGTCCGGCAAAGTTGTCGTGTGAATCGGATCAAGCCAGCCTCTGTTGGGAATGCGATGCCAAGGTTCACAGTGCAAACTTCCTCGTCACCAAACATCCCAGGATTCTTCTCTGCCATGTTTGTCAGTCGCTCACGGCTTGGCACGGAACTGGACCCAAGTTTGTACCCACCGTCTCCGTTTGCAACACTTGTGTTAACAACAACAACGAGAGCCGCAGCCGACAGAATCATGATGAAGATGATGATGACCATAATGATGATGATGATGATGATGATGAGATGGATGACCATGTAGAGAGAGATGAGGGTGGAGCGGAAGAAGACGATGAAGAAAATCAAGTGGTTCCATGGACATCTACACCACCACCCCCAGCTTCCACTTCTTCAAATAGTGCTGCAACTAGTTCTACCAGGTCCTCTAACGTTGAAGATGGGATCTCGGATTAA 471 0.4798 MRKCDLCNSPAKLSCESDQASLCWECDAKVHSANFLVTKHPRILLCHVCQSLTAWHGTGPKFVPTVSVCNTCVNNNNESRSRQNHDEDDDDHNDDDDDDDEMDDHVERDEGGAEEDDEENQVVPWTSTPPPPASTSSNSAATSSTRSSNVEDGISD 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00554 156 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Vimu2g00554 156 MobiDBLite consensus disorder prediction 89 121 - -
Vimu2g00554 156 CDD Bbox1_BBX-like 3 45 - -
Vimu2g00554 156 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 147 - -
Vimu2g00554 156 MobiDBLite consensus disorder prediction 74 156 - -
Vimu2g00554 156 SMART bboxneu5 1 45 IPR000315 GO:0008270
Vimu2g00554 156 MobiDBLite consensus disorder prediction 132 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00554 Vimu-Chr2 3223043 3223513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00554 2 111 C2C2-CO-like Transcription Factor Family AT4G27310 49.091 5.12e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu2g00554 zf-B_box 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00554 - - vum:124826682 215.312