Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00545 ATGACTGGAAATGCAAGTGCAGCTTTGTGCCATTTGAAATTTGCTGCCAAACATGACCAAGAGGAGAACGATTCCTTGACTCCAACATCTTCCATTGCAGATGGCCAAGAACTCATTTCTCCTGGACAGAATTTTTCTCTTGGATTCTTCACTCCAGGAGCATCAAAGAGCCGCTACATAGGGATATGGTACAAGAATATTACCCCTCAAACCATAGTTTGGGTAGCAAACAGAGATAACCCACTTAATGACTCCAGAGGAAATTTAACCATTGCTGCTGATGGTAATATTGTACTTTTTGATGGAGCAGGTAACAGAATATGGTTTACAAATTCATCAAGGTCAATCGAAGAACCAATTGCAAAGCTGTTGGATTCTGGAAACTTTGTGTTGATGGATGGCAAGAAGCATGATTCTAAAGGTTACATATGGCAGAGCTTTGATAATCCTACAGACACAATGTTACCTGGGTTGATGTTGGGTTGGGATAAGAACTTAGGTATCAATAGATATTTGACTTCTTGGAAGAGTGCTAATGATCCCTCTCCTGGAAACTTTACCTACAGGTTTGACCAGATAGAATTTCCTGAGTTGGTAATCCGCCAGGGAACGAACATCACATTCAGAAGTGGAATTTGGGATGGCATCCGTTTTAATTCAGATGATTGGTTGTCCTTTATGGGAATTACAGCCTTCAAGCCACAACTTTCAGTAAATAGCACTGTGGCAGTGTATTGGGATGAACCTGGAGATAGATTGTCAAGATATGTGATGAAGGATGATGGACTCCTTCAAAGATATATCTGGGACAACAAAAATTTTAAGTGGACTCTGATGCATGAGGCAAGAAAGGACTTTTGTGATAACTACGGAGCATGTGGGATGAACGGTATTTGCAATATGAAGGATATTCCTGCTTACTGCGATTGCTTGAAAGGATTTACACCACATTCTCCGGAAGATTGGGATTCATTTAACTGGTCTGGTGGGTGCATCAGGAGAACACCCTTAAACTGCACACAAGCTGATAGGTTTCAGAAACTAAGCTGGGTTAAACTACCCATGTTGTTGCAATTTTGGACTAATGAAAGCATGAATCTTGAAGAATGCAAGGTGGAGTGCTTGAAGAACTGTTCCTGCACGGCGTACGCGAACTCAGCCTTGAATGAAGGGCCACATGGATGCTTGCTCTGGTTTGGGGACTTGACTGACATTCGGCAGCTTATAAATGAAGAGGGTGTACAACTTGATCTTTATTTAAGGTTAGCCGCTTCAGAAATAGTCACAGTCACAAGTCACAGAAATCAAAATGAAGATCAAGCATCACCTATTTTTGATATAGATACTATTCTGGCTGCTACAAACAATTTTTCCATTGAGAACAAGATCGGGGAAGGTGGTTTTGGCCCAGTATACAGGGGTAAATTGGCTAATGGACAAGAAATAGCTGTGAAAAGGCTATCAAAAACCTCAAAACAAGGCATCTCAGAGTTTATGAATGAAGTTGGATTGGTAGCCAAACTCCAACACCGTAATCTTGTGAGTGTTTTGGGAGGATGCACTCAAAGAGAGGAAAGAATGCTGATCTATGAATACATGCCAAATAGTAGCTTGGACCACTTCATTTTTGGTAATACCACAACTGCAAGACTATGCAATCCTATACAAGGAAAATTTTTGAACTGGAGGAAACGATATGAAATTATCATTGGGATTGCCAGAGGACTACTTTATCTCCACCAAGATTCAAAACTAACCATCATTCATAGGGATCTAAAAACTAGTAACATTCTACTAGACAGCCAATTGAACCCCAAAATTTCGGATTTTGGTGTGGCCCGCATCGTTGAAGGAGATCATTCTTCAATAACAACAGAAGAGATTGCTGGGACAATTGGTTACATGCCTCATGAGTATGCAGTAAACGGGATTCTTTCCCTGAAGTCTGATGTATATAGCTTCGGAGTTATAGTGTTAGAGATACTAAGCGGGATCAGAAGTAGTCACTACAAAGTCAAGCATCCAGATCATGATCACAATCTGATGGGGCAGGCATGGACATCATGGAAAGATGGAGGAGCTGTGGGATTTATGGATGTTAATTTAGACCTTAGAGTGGTTCCATCAGAATTACTAAGGTGTCTGCAATTACCTGAAGATAGACCAACTATGTCTTCTGTTGTTTTTATGTTGAGCAATGAAAGCATTGTTCTTCCCCAACCAAAGAAAACTGGCTTCTTTGAACAAGAGTCAGAGTATCATCATGCCTACAGCGAGAATGAGAGTTTTAGTAACAATGCTATGACTATAACTCTATTAGAAGCTCGAAGTTAG 2334 0.4057 MTGNASAALCHLKFAAKHDQEENDSLTPTSSIADGQELISPGQNFSLGFFTPGASKSRYIGIWYKNITPQTIVWVANRDNPLNDSRGNLTIAADGNIVLFDGAGNRIWFTNSSRSIEEPIAKLLDSGNFVLMDGKKHDSKGYIWQSFDNPTDTMLPGLMLGWDKNLGINRYLTSWKSANDPSPGNFTYRFDQIEFPELVIRQGTNITFRSGIWDGIRFNSDDWLSFMGITAFKPQLSVNSTVAVYWDEPGDRLSRYVMKDDGLLQRYIWDNKNFKWTLMHEARKDFCDNYGACGMNGICNMKDIPAYCDCLKGFTPHSPEDWDSFNWSGGCIRRTPLNCTQADRFQKLSWVKLPMLLQFWTNESMNLEECKVECLKNCSCTAYANSALNEGPHGCLLWFGDLTDIRQLINEEGVQLDLYLRLAASEIVTVTSHRNQNEDQASPIFDIDTILAATNNFSIENKIGEGGFGPVYRGKLANGQEIAVKRLSKTSKQGISEFMNEVGLVAKLQHRNLVSVLGGCTQREERMLIYEYMPNSSLDHFIFGNTTTARLCNPIQGKFLNWRKRYEIIIGIARGLLYLHQDSKLTIIHRDLKTSNILLDSQLNPKISDFGVARIVEGDHSSITTEEIAGTIGYMPHEYAVNGILSLKSDVYSFGVIVLEILSGIRSSHYKVKHPDHDHNLMGQAWTSWKDGGAVGFMDVNLDLRVVPSELLRCLQLPEDRPTMSSVVFMLSNESIVLPQPKKTGFFEQESEYHHAYSENESFSNNAMTITLLEARS 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00545 777 Gene3D Phosphorylase Kinase; domain 1 430 532 - -
Vimu2g00545 777 Pfam D-mannose binding lectin 71 176 IPR001480 -
Vimu2g00545 777 Pfam PAN-like domain 339 405 IPR003609 -
Vimu2g00545 777 CDD B_lectin 29 150 IPR001480 -
Vimu2g00545 777 SMART serkin_6 457 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00545 777 ProSitePatterns Serine/Threonine protein kinases active-site signature. 587 599 IPR008271 GO:0004672|GO:0006468
Vimu2g00545 777 PIRSF SRK 425 776 IPR024171 GO:0004674
Vimu2g00545 777 PIRSF SRK 4 441 IPR024171 GO:0004674
Vimu2g00545 777 Gene3D Transferase(Phosphotransferase) domain 1 533 742 - -
Vimu2g00545 777 CDD STKc_IRAK 463 731 - -
Vimu2g00545 777 FunFam Lectin-domain containing receptor kinase A4.3 533 747 - -
Vimu2g00545 777 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 23 716 - -
Vimu2g00545 777 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 181 IPR036426 -
Vimu2g00545 777 SUPERFAMILY Protein kinase-like (PK-like) 440 731 IPR011009 -
Vimu2g00545 777 SMART ntp_6 340 422 IPR003609 -
Vimu2g00545 777 ProSiteProfiles Protein kinase domain profile. 457 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00545 777 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Vimu2g00545 777 ProSiteProfiles PAN/Apple domain profile. 339 423 IPR003609 -
Vimu2g00545 777 CDD PAN_AP_plant 335 423 - -
Vimu2g00545 777 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 424 532 - -
Vimu2g00545 777 Pfam Protein tyrosine and serine/threonine kinase 458 674 IPR001245 GO:0004672|GO:0006468
Vimu2g00545 777 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 147 - -
Vimu2g00545 777 Gene3D - 17 147 IPR036426 -
Vimu2g00545 777 SMART blect_4 29 150 IPR001480 -
Vimu2g00545 777 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00545 Vimu-Chr2 3147312 3150962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00545 437 772 Receptor kinase-like Gene Family AT4G23150 47.126 8.73e-98 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu2g00545 PK_Tyr_Ser-Thr 5.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00545 - - gmx:102669607 1259.97