Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00544 ATGGAGAAAACCAAGTTCACCCTTTTATTTTTTGTTACTTGTTGCTATTTCCTGTCCTTGTTTCCTACGGCTTTGGAAGCAGAGGATGAAATAACTCCTCCACAAACCATCAGTGGCAACCAGACACTAGTCTCACCTTCTCAAAATTTTGAACTGGGTTTCTTCAGTCCTGCCAATTCCACTCACATTTATCTTGGAATATGGTACAAGCGTATCCCAAACAAGACAGTTATTTGGATTGCAAATAGAGACAAACCACTAGTTAACTCTGGTGGCTCCTTGACATTCAGTGATGATGGCAAGCTCATTCTTTTAAGCTACACAGGAGGTGTTGCATGGTCCTCAAACTCATCTGGGCCTGCAAAAAATCCGGTGGCGCAGCTACTAGATTCCGGAAACTTTGTTTTAAAAGACTATGGAAATGAGAGATATTTATGGGAGAGTTTTGATTGCCCATCTGACACATTGATACCAGGAATGAAACTTGGTTGGAACTTCAAAACTGGCTTGAATCGACACTTGACTTCCTGGAAAACCACTTCTGATCCTGCTTCGGGAGAATATACCTACAGTGTGGATCCACGTGGCCTTCCTCAGCTTTTCCTTCACAGGGGAAACAAGCAGATTTTCAGAAGTGGACCATGGTATGGACAACAATTCAAAGGTGACCTGGCTCTCAGTGCAAATCCAGTTTTCAAACCCATATTTGTGTTTGATTCTGATGAAGTGTCTTACTCCTATGAGACCAAAGACACCATCATTTCAAGATTTGTGCTGAGTCAGTCTGGTTTGATTCAGCATTTTTCATGGAATGATCATCATTCGAGTTGGTTTTCTGAATTTTCAGTTCAAGGGGACCGTTGTGATGATTATGGTCTTTGTGGTGCTTACGGTTCTTGTTACATCAATAGCTCCCCTGTCTGCAAGTGTTTGAAGGGTTTTGAGCCGAAGCTTCTGCAGGAATGGGAAAGGTCTGAGTGGTCAGATGGATGTGTTAGAAAAAACACACAGGTTTGCAGCAACGGAGATGCATTTCAGCAGTTTACAGGAATGAAGCTTCCAGATGCCGCTGAGTTTCGTACAAACTACAGCATCAGCATTGATCACTGTGAGAAAGAATGCTCTAAGAACTGCTCTTGTGTTGGTTATGCAAAACTAGATATAAATGCAAGTGGCAAAGGTTGTATTGCATGGTTTGGGGATTTGCTGGATATAAGAGAGGTTTCTGTGAATGGACAAGATTTCTACCTGAGGGTTGCAGCATCAGAAGTGGATAAGAACATTGAAGCAGCCAAACAGACCGGTAGTCAGTTTAGTGTTGGCAGAGTCAGGAGTGAAAGGAATGAATTTGAACTTCCAATGTTTGAGATTGGCATGATTGAAGCCGCCACTGGGAATTTCTCTAATTACAACAAGATTGGAGAAGGTGGATTTGGTCCCGGTCAACTTCCATCAGGACAGGAAGTAGCTGTGAAAAGGCTGTCAGAGAATTCTGGACAAGGCCCGCAGGAGTTCAAGAATGAGGTCATTTTGATCTCCCAACTTCAGCATCGAAATCTTGTCAAGCTTCTGGGTTGTTGCATTGACGGTGAAGATAAAATATTGATCTATGAGTACATGCCAAACCGAAGCTTGGACTCCTTATTATTTGGTTGTTGGAAAAAGAGGCTAGACATAATTATTGGCATTGCTCGGGGAATTCTCTACCTTCACAGAGATTCAAGACTGAGAATAATCCATAGAGACCTGAAAGCAAGCAATGTTCTTTTAGACGGTGAAATGAATCCAAAAATTTCTGACTTTGGAATGGCAAGAATGTTTGGTGGAGATCAAACTGAAGCAAAGACCAAGAGAGTAGTGGGAACCTAG 1869 0.4227 MEKTKFTLLFFVTCCYFLSLFPTALEAEDEITPPQTISGNQTLVSPSQNFELGFFSPANSTHIYLGIWYKRIPNKTVIWIANRDKPLVNSGGSLTFSDDGKLILLSYTGGVAWSSNSSGPAKNPVAQLLDSGNFVLKDYGNERYLWESFDCPSDTLIPGMKLGWNFKTGLNRHLTSWKTTSDPASGEYTYSVDPRGLPQLFLHRGNKQIFRSGPWYGQQFKGDLALSANPVFKPIFVFDSDEVSYSYETKDTIISRFVLSQSGLIQHFSWNDHHSSWFSEFSVQGDRCDDYGLCGAYGSCYINSSPVCKCLKGFEPKLLQEWERSEWSDGCVRKNTQVCSNGDAFQQFTGMKLPDAAEFRTNYSISIDHCEKECSKNCSCVGYAKLDINASGKGCIAWFGDLLDIREVSVNGQDFYLRVAASEVDKNIEAAKQTGSQFSVGRVRSERNEFELPMFEIGMIEAATGNFSNYNKIGEGGFGPGQLPSGQEVAVKRLSENSGQGPQEFKNEVILISQLQHRNLVKLLGCCIDGEDKILIYEYMPNRSLDSLLFGCWKKRLDIIIGIARGILYLHRDSRLRIIHRDLKASNVLLDGEMNPKISDFGMARMFGGDQTEAKTKRVVGT 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00544 622 CDD PAN_AP_plant 339 420 - -
Vimu2g00544 622 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
Vimu2g00544 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 578 590 IPR008271 GO:0004672|GO:0006468
Vimu2g00544 622 Pfam PAN-like domain 339 405 IPR003609 -
Vimu2g00544 622 ProSiteProfiles PAN/Apple domain profile. 339 420 IPR003609 -
Vimu2g00544 622 SMART ntp_6 340 419 IPR003609 -
Vimu2g00544 622 FunFam Cysteine-rich receptor-like protein kinase 11 466 539 - -
Vimu2g00544 622 Gene3D Transferase(Phosphotransferase) domain 1 540 622 - -
Vimu2g00544 622 ProSiteProfiles EGF-like domain profile. 284 320 IPR000742 -
Vimu2g00544 622 CDD B_lectin 35 152 IPR001480 -
Vimu2g00544 622 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 183 IPR036426 -
Vimu2g00544 622 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 616 - -
Vimu2g00544 622 Gene3D Phosphorylase Kinase; domain 1 441 539 - -
Vimu2g00544 622 FunFam Os07g0541700 protein 540 622 - -
Vimu2g00544 622 Pfam Protein tyrosine and serine/threonine kinase 472 614 IPR001245 GO:0004672|GO:0006468
Vimu2g00544 622 ProSiteProfiles Bulb-type lectin domain profile. 28 149 IPR001480 -
Vimu2g00544 622 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 149 - -
Vimu2g00544 622 ProSiteProfiles Protein kinase domain profile. 467 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00544 622 SMART serkin_6 467 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00544 622 SUPERFAMILY Protein kinase-like (PK-like) 453 622 IPR011009 -
Vimu2g00544 622 Gene3D - 23 150 IPR036426 -
Vimu2g00544 622 SMART blect_4 34 152 IPR001480 -
Vimu2g00544 622 Pfam D-mannose binding lectin 76 178 IPR001480 -
Vimu2g00544 622 Gene3D Hepatocyte Growth Factor 335 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00544 Vimu-Chr2 3141346 3144017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00544 451 622 Receptor kinase-like Gene Family AT4G05200 63.736 1.98e-69 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu2g00544 PK_Tyr_Ser-Thr 4.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00544 - - gmx:100804024 1108.2