Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00542 ATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTAATTCGACAAGAAGTGTGTTCCCTCTTATCTCATCAACATGTTCAGTGGCAGCAGCTGATGCAGGAAACTACAGTACTTGGCAAAGCACTGATTTCGTGGATTTGAAGGGAACGAGGTCTTGCGCTGAGGACATTAATAACTTTATTTCTTCTGATAATTCTCTGAGTTTTCTTGATGTTGAGAAGCCCCAGCTGAGGGACACGGCTGGTGGAACTGGAAGCATCCTCACCGATTCCACCTTACAAATGATAGGTTTTGGCATGTCATCTTCAACTTCATCCAATTGGAATCAATCTTTATTAGGGAGCGATTTTCATTCTGTGCTTCAAGGAGAAACAGTCATGGATGGCGATCTACCAAAGAATTTCTCATCTGCTGGTGGCCAAGGTTCCACCGTTGATGCTTTCAAGTCAATGAACCAAGAATTTTCCTTGGATCAGCAAAGTCTGAATTCCGTTGTTACAAGCACCGGATCATTATCTGGTGGTTTTCCAGTTGTTTCAGCCTCCTATGGTTACCCTTCAACCTTGATACAAGGCTTATACGACCCTGAGCCTCAACCACAGCCACAGAACTCACTTTTCACCAACCCCCCCATGTCCTATTCTTCATCTACCGCAAACTATGGGACATGTTCCAATGAACTGTCACCAACTTGGGCCAAAATCTCTTCCCTTCTCAAGCCCTCAACGCCAAAACAGCAGCTTAGTGGATTGCACTTTTCCAACAACACTTCTTTCTGGAATGGTTCCGCCGAAGCACTTCATGACATAAGAGCAGGTGTTTTTGCTTCCTCACAGGCGCAATATCAAACGACAAAATTTGAAGAGAAATCCAACAGCTCCAATACTCTATTAAACAAGCTCAAGAGAGAAGAATCACCAGACGCAATCTCATCTGCGAAGAAAAATTCTTCTGAGCCTGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTAAGGAAGGAAAAGCTAGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTTGGAAAGACGGACACAGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGTCAGTGTATGTTTCCATTGGTCTTACTTTGTGTTGAGCACTCCATATATTAAAAATGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGAGTCAGAAGGGCGAAAAGAAGACCTGAGAAGCCGAGGGCTGTGTTTAGTACCGGTTTCGAGCACATTTCCGGTGGCTAATGAGAGCAGTGTTGATTTCTGGACGCCAACATTCGGAGGTGCAGTGATTGGCAGGTAG 1389 0.4456 MAEEFQAAICGESWWNINSTRSVFPLISSTCSVAAADAGNYSTWQSTDFVDLKGTRSCAEDINNFISSDNSLSFLDVEKPQLRDTAGGTGSILTDSTLQMIGFGMSSSTSSNWNQSLLGSDFHSVLQGETVMDGDLPKNFSSAGGQGSTVDAFKSMNQEFSLDQQSLNSVVTSTGSLSGGFPVVSASYGYPSTLIQGLYDPEPQPQPQNSLFTNPPMSYSSSTANYGTCSNELSPTWAKISSLLKPSTPKQQLSGLHFSNNTSFWNGSAEALHDIRAGVFASSQAQYQTTKFEEKSNSSNTLLNKLKREESPDAISSAKKNSSEPAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVCFHWSYFVLSTPYIKNGAPIQHQQDCDNLKESEGRKEDLRSRGLCLVPVSSTFPVANESSVDFWTPTFGGAVIGR 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00542 462 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 169 441 - -
Vimu2g00542 462 Gene3D - 342 388 IPR036638 GO:0046983
Vimu2g00542 462 CDD bHLH_AtbHLH_like 338 387 IPR045239 -
Vimu2g00542 462 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 332 381 IPR011598 GO:0046983
Vimu2g00542 462 MobiDBLite consensus disorder prediction 307 330 - -
Vimu2g00542 462 FunFam Transcription factor bHLH123 family 342 412 - -
Vimu2g00542 462 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 390 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00542 Vimu-Chr2 3129683 3132184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00542 1 457 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 38.819 1.81e-68 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00542 - - gmx:100805087 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03466 11 55925093 55931266 Vimu2g00542 2 3129683 3132184 PCT