Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00536 ATGGAGTATGAAGATGAGGATTGGTTATGTGTAACTATGGAAGAGTTTTCTCTTGCTACTGAAAATGGTTCTAGCAAGCAAGGGATGAGTAAGAAGAGAAACTATGATGATGATACTAGAGAGTTCAAATCAAAGAACCTAGAGACGGAAAGAAGAAGGAGGGAGAAGCTTAGTAGCAGACTCTTGATGCTTCGTGCTATAATGAACAAGGCCACAATTATTGAAGATGCCATAACCTACATTGAGAAGCTTCAGGACAAAGTTCAGAGTCTCAGTCAAGAGCTTCACCAAATGGAAACAACTTCAGAAGAAACAGGAGAGACAAAAACAGATGAAATTGATGCTGCACAAGATATGAAGGATTTGGGAATACAGGAAGAAGTTAGAGTGGCACAAATAGACGGAAATAAACTCTGGGTTAAGATCATCATTGAGAAGAGAAAAGGAAGATTTAGAAAATTGATGGAAGCTCTCAATAATTTCAGCATTGAACTCATAGACACCAATCTCACAACCACAAAAGGAACATTTCTTATTTCAAGCTGTATACAGATGAATAGAGGAACTATTATTGTAGATGCTATCACCTACATTGAGAAGCTGCAAGATGAAGTCCAGAATCTCAGTCAACAACTTCACCAAATGGAAGCAACTTCAGAGGAAACAACAGAGACAAAAATAGATGAAATTGAAGCTGTGGAAGATATGAAAAATTGGGGGATACAGGAAGAGGTCACTGTGGCACAAATAGATGAGAATAAGTTCTGGGTCAAGATCATCATTGAGAAAAAGAGAGGAAGTTTCAGCAAGCTGATGGAGACACTCAATTACTTCGGCATTGAGCTCATGGACACTAATCTGACTACCACAAAAGGAGCATTTCTGATTACAAGCTGCATACAGGGAAAAAATGGAGAAAGACTTGAAATTAATCAAATCAAGGATTTGTTGCAAGATATTATCAATGACATGTAG 975 0.3785 MEYEDEDWLCVTMEEFSLATENGSSKQGMSKKRNYDDDTREFKSKNLETERRRREKLSSRLLMLRAIMNKATIIEDAITYIEKLQDKVQSLSQELHQMETTSEETGETKTDEIDAAQDMKDLGIQEEVRVAQIDGNKLWVKIIIEKRKGRFRKLMEALNNFSIELIDTNLTTTKGTFLISSCIQMNRGTIIVDAITYIEKLQDEVQNLSQQLHQMEATSEETTETKIDEIEAVEDMKNWGIQEEVTVAQIDENKFWVKIIIEKKRGSFSKLMETLNYFGIELMDTNLTTTKGAFLITSCIQGKNGERLEINQIKDLLQDIINDM 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00536 324 Gene3D - 39 109 IPR036638 GO:0046983
Vimu2g00536 324 Coils Coil 74 101 - -
Vimu2g00536 324 Gene3D - 150 237 IPR036638 GO:0046983
Vimu2g00536 324 SMART finulus 142 207 IPR011598 GO:0046983
Vimu2g00536 324 SMART finulus 47 90 IPR011598 GO:0046983
Vimu2g00536 324 Coils Coil 191 225 - -
Vimu2g00536 324 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 179 318 - -
Vimu2g00536 324 MobiDBLite consensus disorder prediction 20 50 - -
Vimu2g00536 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 101 IPR036638 GO:0046983
Vimu2g00536 324 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00536 Vimu-Chr2 3098740 3102277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00536 185 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 40.690 2.26e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00536 - - vun:114186874 583.178