Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00533 ATGTTTGAGGCTTGGCTTTCTCTCAAGAAGACCCTTCAGTGCAAGCCACAACCAAATCATGTTCATGATCCAAAGACTATTAGGCAACAAAAAGGTAATCAGAGAACAAAGTTGGGCAATCTTGAGAATTCAAATACCAAAGATTTCATCCATGGAAGCAATAGGCACTCTAAAAATCCCCTGAGTTTTAAAGGAGACATTGAGATCACTGGTCCCATAATCGACGAAATTACTCTTGATAGGTCAAACCATGAAACTAGTCGACGCTTTCCTTGTCCTCAAAGCAATAGCAGCAATAAAGCTTCTCGCAGAACACGAAGGTCAGATACATCTTCGAGGATAGCTTATCCTTTAGATCATAATGAAGCAAATGTGTTCTCCAATACAAGGACTTTGGTTCGGATGGATTCTGATGTCTTTTTATCATTGACATGTGATAAATGTGGCGAGAAATTAAAAAATCCTGTTGCTGTAGAAGCACACAATATCTCCGATCATTCAGTGATTGAGCTTGAGGAAGATTCGTCAAGACAGATCATAGAAACAATATGTGGAACAAGCTCGGTTTACTCTGAGAGCATGTTGGGTGAGATTGACTGCATCTTAAAAGTTGTGAATATACCAAAAACCTTTGCTTGCTTTGAGGAGTACAGAGAAAGGGTGAAGGAAAAGGCTGACAAACAAAAGAAGAAACACCCTCGTTGTGTGGCTGATGGAAACGAACTTTTAAGGTTCCACGGCACAACCATTGCATGCTCTCTGGGCATAAACAGCTGTTATAGGCTGTGCACTTTAGACTATTGTGGTATATGTCAAATTCTGAGACATGGGTTCTCGACGAACAAGGAATTCAAAGGTGCATTGGGGGTTTACACAACTTCAACAAGTGGGAAAGCCTTTGAATCCATTTCCATAATGACATCCCATGAGAGACCATTTTCGAGAAAGTCCATCATAGTGTGCAGAGTAATAGCTGGGAGAATTTGTAGCCCTCTTGAAGGAATTGAAGAAAGGGGTGATTCATTGACAGAAAAGATAAATGGGCATTCAGATGTTGAGGAACTGTACGTGTTAAATCCCAGAGCCCTTCTTCCTTGCTTTGTGGTAATCTACAAACAGCAAACAGCCAAGTTTAGAAGGTTCTACGAGTCGTCCGGTCACCTGTACCTCCTTTCCAACCTTCAGTCTGTCCGTCCTACGCACCCTTCTTTCAATAACCGTCGGTCGTCGGCCGACCAGTATTTATTTCGGTCGGCCCATGGCCGGGCGGATGACCAATAG 1281 0.4239 MFEAWLSLKKTLQCKPQPNHVHDPKTIRQQKGNQRTKLGNLENSNTKDFIHGSNRHSKNPLSFKGDIEITGPIIDEITLDRSNHETSRRFPCPQSNSSNKASRRTRRSDTSSRIAYPLDHNEANVFSNTRTLVRMDSDVFLSLTCDKCGEKLKNPVAVEAHNISDHSVIELEEDSSRQIIETICGTSSVYSESMLGEIDCILKVVNIPKTFACFEEYRERVKEKADKQKKKHPRCVADGNELLRFHGTTIACSLGINSCYRLCTLDYCGICQILRHGFSTNKEFKGALGVYTTSTSGKAFESISIMTSHERPFSRKSIIVCRVIAGRICSPLEGIEERGDSLTEKINGHSDVEELYVLNPRALLPCFVVIYKQQTAKFRRFYESSGHLYLLSNLQSVRPTHPSFNNRRSSADQYLFRSAHGRADDQ 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00533 426 Gene3D - 165 377 - -
Vimu2g00533 426 SUPERFAMILY ADP-ribosylation 233 375 - -
Vimu2g00533 426 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 5 371 - -
Vimu2g00533 426 MobiDBLite consensus disorder prediction 16 64 - -
Vimu2g00533 426 ProSitePatterns Zinc finger C2H2 type domain signature. 145 166 IPR013087 -
Vimu2g00533 426 MobiDBLite consensus disorder prediction 31 48 - -
Vimu2g00533 426 MobiDBLite consensus disorder prediction 82 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00533 Vimu-Chr2 3069293 3071464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00533 4 372 C2H2 Transcription Factor Family AT5G54630 40.757 3.36e-91 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00533 - - gmx:100807216 564.303