Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00530 ATGGCGCAGAAGCAGAAGCGTCCTTCCCCTCTGGATGAGCCACCCACGGCTTCTTCTTCAGATTCCGAGGAAGAAGAAACGCAAAACCCATCTTCTCTGCGGCATGGAAAAGAAGAGGAAGAAGCTTCATCGGGAGAAGAGGATGAAGAATCCTCCGGAGAAGAGGCAGAAGATGACGATCTTCCACCACCCATCACCAAAACCAACCCTCCACCCGCTCTCACGAAACCTCATCCCGAATCCGCATCTTCTGATTCTGAAACAGAATCCGAATCAGAGACCGAGTCGGAAACTGAATCTACTCCTGCGAAGGCGGTGAAGCCTCTCGCGACCAAGCCCATGGACCAGGCACAAAAGCCCAAGGCCCTACCTCCTCCGGCGCCACCCAAACCGGCTCTGAAACGCGCCGCCGAGAACAGCAACGCCCACGTCCCGCAGAAAAAGAAGAAATCCGGCGATTCTTCTTCTTCCCCTGCCGCTTCCGACGAAGAGATGGAGGAAGGGAAGAAGTCCGGCGATCAAATGAAGAAGTTTCAGAGGCTGTGGAGCGAGGAGGACGAACTCGCCATTCTGAAGGGCTTGGCTGATTTCACCTCAAAAACAGGGCAGGACCCTCTTAAGTTTGCGGGTGGAAATGCTTTCCATGATTTCTTGAAGAAGTCCCTGCATGTGGAAGTTACCAGCAACCAGCTGAAGGAGAAGGCTCGGAGACTGAAGAAGAAGTATGAGATCGCTGCAGTGAAAGGGAATAGCGCTGATGGCCTTATATTTTCAAAGCCGCACGATAAGAAAACGTTTGAATTGTCGAAAAAGGTTTGGGGAAGTGAGCAAGATGGTGGAGTGGCCAATGGGGCAGTGGAAAAGCCCAAGGCTAACGGGAGTGCTGCTAAGAGTCCGAAGAAGAAGGAAACCGGTAGCAGGAATGTGGCTTCAGCCAAGAAAGCTAAACCTGAACCGAAACAGGAGACGGTTCCAGCGACGCGCATGGAGTTCAAGGAATCTGAAAAGATGCATATCGATCAAAAGCCTGTTAATTGTGAAGTGAGTATGTTTTTGCATGCAGTGTCCCACTTTAAAGAGGGTCTGGGTTTTTGTGGCTTGGACGAGGAGGATGTGAAGAAGGGGTTGGAATTAATTGGTGAATCGAAGAGGACAGAGTTGAGGGCAAAGTGGAAGAAATTACAACGTTCTGAATTGGAACTGTTTGCTAATCGCTCAGAACTGATTGGGGAGCAAACTAAATTGATAGTTGAGGCACTTCAGTCGTCCAACCATTAG 1278 0.5039 MAQKQKRPSPLDEPPTASSSDSEEEETQNPSSLRHGKEEEEASSGEEDEESSGEEAEDDDLPPPITKTNPPPALTKPHPESASSDSETESESETESETESTPAKAVKPLATKPMDQAQKPKALPPPAPPKPALKRAAENSNAHVPQKKKKSGDSSSSPAASDEEMEEGKKSGDQMKKFQRLWSEEDELAILKGLADFTSKTGQDPLKFAGGNAFHDFLKKSLHVEVTSNQLKEKARRLKKKYEIAAVKGNSADGLIFSKPHDKKTFELSKKVWGSEQDGGVANGAVEKPKANGSAAKSPKKKETGSRNVASAKKAKPEPKQETVPATRMEFKESEKMHIDQKPVNCEVSMFLHAVSHFKEGLGFCGLDEEDVKKGLELIGESKRTELRAKWKKLQRSELELFANRSELIGEQTKLIVEALQSSNH 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00530 425 MobiDBLite consensus disorder prediction 294 326 - -
Vimu2g00530 425 Pfam Protein of unknown function, DUF573 178 274 IPR007592 GO:0006355
Vimu2g00530 425 PANTHER BNAANNG10740D PROTEIN-RELATED 71 419 IPR007592 GO:0006355
Vimu2g00530 425 MobiDBLite consensus disorder prediction 162 178 - -
Vimu2g00530 425 MobiDBLite consensus disorder prediction 277 326 - -
Vimu2g00530 425 MobiDBLite consensus disorder prediction 27 41 - -
Vimu2g00530 425 MobiDBLite consensus disorder prediction 42 59 - -
Vimu2g00530 425 Coils Coil 228 248 - -
Vimu2g00530 425 MobiDBLite consensus disorder prediction 1 178 - -
Vimu2g00530 425 MobiDBLite consensus disorder prediction 12 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00530 Vimu-Chr2 3060562 3061839 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00530 6 419 GeBP Transcription Factor Family AT1G61730 31.294 1.06e-31 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vimu2g00530 DUF573 1.6e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00530 - - gmx:100791520 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00530 2 3060562 3061839 Vimu2g00530 2 3060562 3061839 ECH