Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00528 ATGAGTAACAGTGACTGGGTGTTGGATTATGATTATCTAGACAGCATTTCTTTTCCCACTCTTCATCCACCCAATTTCTCTTGGTCTTCTTCCTCTCCTCCTACCACCTTCAGTGCGGACGTAGATGACCCATTGGGAATTTCGGATGGTTTCAAGGAAAACGGGTCAAAGAAACGGTTTTTGGAACTGGGGTCTGTCCTGGACCCTGCAAGGCCTCTCAAAATGGAAAAGGCTGTTATATTAAGTGATGCAGTTCGAACGGTGTCTCAGTTACGAGAGGAAGCTCAGAAGCTACGAGAGTCCATTAAGAATCTACAAGGGAAAATCAATGATCTGAAGGCTGAGAAGAATGAGCTTCGTGAGGAGAAGCAGCAACTAAAAACAGAAAAAGATAACCTTGAGCAGAAGATTGAGGCCTTTAAGTCACAACCTAGCTTTCTTTCTGCAGTTCCTGCACCAGGACAAGTTGTTGGTAGAAAGTTGGTGCCCTTCATGGGCTACCCAGGAGTTGCCATGTGGCAGTTTTTACCACCTGCTGCTGTTGACACCTCACAGGACCATGTACTCCGGCCACCGGTTGCATAA 585 0.4632 MSNSDWVLDYDYLDSISFPTLHPPNFSWSSSSPPTTFSADVDDPLGISDGFKENGSKKRFLELGSVLDPARPLKMEKAVILSDAVRTVSQLREEAQKLRESIKNLQGKINDLKAEKNELREEKQQLKTEKDNLEQKIEAFKSQPSFLSAVPAPGQVVGRKLVPFMGYPGVAMWQFLPPAAVDTSQDHVLRPPVA 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00528 194 Gene3D - 74 143 - -
Vimu2g00528 194 SUPERFAMILY Prefoldin 88 145 - -
Vimu2g00528 194 PANTHER BHLH TRANSCRIPTION FACTOR 58 194 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Vimu2g00528 194 Coils Coil 81 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00528 Vimu-Chr2 3052406 3054694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00528 3 194 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 49.565 4.49e-64 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00528 - - ccaj:109814067 280.026