Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00523 ATGTCTACAAAAATGAAGCCTACCTCAAGAAATTATTATCCTCTTGTTTTCTTTGGGTCATTATTCTGTCTCTTTATGGCCAGATTTGGTGCTGAAAGTGACATCTATTGCTTGCAAACCATCAAGAACATGGACACTTCTGATCTCTTATCTAGCTGGGATTTCCGGAGCAACACTGAGCGTGGCATATGCAGATTCAGCGGTGTTGAATGCAGCAACAACTATGTGGAAGATAGAGTAATCAGTCTATGGCTATCTAACATGGGGCTGAAAGGCCAGTTTCCTCGTTGCATCGAAGATTTCACATGGTTGCAGACTCTGATCCTCTCACACAACGAGCTTTCTGGATATATCCCAAACGATATATCAGCCAAGCTGCCATATCTGACCACACTTGATCTCTCAAATAACTATTTCTCTGGTGAAATTCCAAAGGGTATTGCCAATTTGTCAGGCTTAATTACCCTTCTACTTGATGGCAACCAGTTAACAGGCCAAATCCCACAAGATCTTGGGTTGCTTCCCAGGCTGAGAGATTTTAGTGTTGCAAACAACTTGTTGGAAGGGTCAGTGCCGGCTTTTGTGAGCAATCTTAATGTGAGTTTGAGCTATGCAAATAATAGTGGACTCTGTGGGGGAATACTAGGAAACTGTGATGAGAGCTTGTTTGGTAGATCGTTCTGGTATAGTTTTATTGTTGGTTTTGCTTGCTCAGCTACTTCTGTTCTAGTATCTTTCAAGTACTATTATGCACCTTGGACAGAATTCAAAAAGAGGAGTAACGCTGTTCATCCCCTAGTCAAGAAGCAGAATACTGAACAAGAAGCTGAACTGCTACCACTGGCCTTTCATGAGCAAGGAAGCAAAGAGCTATCAATATTGTTGGAGAGATTTATTACTAGAATGAGCTTCAAGGCATTATGCAAGGCAGCCGATTACTTTTGCATTGATAACGTGTTGGGGATAGGAAAGACAGGGATTATGTACAAGGCAAAGGTATCAAATAGCTGTTTTCTGGCAGTTAAGAGACTGTATGATGCTGATAAGTACAAGTGGAAATTCTTACTTGAAATAATGATTCCGGGAAGACACAGGCACAGAAACATAGTTCTACTGCATGGATTCTGCATAGAGAAACATGAAAGGATTTTGGTGTATAAGTACATTTCTAATGGTCGACTCAGTGATTGGTTACAATCTGACGAGGGACATCAACCAACAAAATTAGAATGGCCGGAGAGGATTCACATTGCACTTGGGATTGCAAGAGGTTTATCTTGGCTCCACAAAAGGTGCAACATAGTCCACCTCAATTTAGACTCAGAGTGTGTCTTGCTGGACAAGAACTTTGAGCCAAAAATTTCCAATTTTGGCAAGGCGAAATTTCTAAACCAGACTGTTGAAGATCATGTGAGGATGAAAATGTTTTTGGTTGATGGACTTGGAGTGAAGGGTTATGCTGAGAAGGATGTCTATGATTTTGGAATAATCCTTTTTGAGCTTTTAACGGGGAAAAGACTAAGTCCATCGACTGATTCTTCTGACAGTATTAATGGCCATATGATGAAGTATATCAGTAAGAACTTGTTCACTGATCCTGCTGACTTTTATGATGCCATTGACTATTCTATAATGGGGAAGGGTTTTGATGATAAAATCCTACGTCTTCTTGAAGTTGCATGTGACTGTGTTAAGACATCTCTGAAGCAAAGGCCAAAGATGGTTGATATTCACCAAACTATAAGAGCTATGTGGGAGGGCTATAAACCCTGCTTTCATTCTGAAAGTTTGAAACTGTCTATGAATTGTGCTGACCATATCAGCCAAATTGAATGTATTGAATAG 1845 0.4033 MSTKMKPTSRNYYPLVFFGSLFCLFMARFGAESDIYCLQTIKNMDTSDLLSSWDFRSNTERGICRFSGVECSNNYVEDRVISLWLSNMGLKGQFPRCIEDFTWLQTLILSHNELSGYIPNDISAKLPYLTTLDLSNNYFSGEIPKGIANLSGLITLLLDGNQLTGQIPQDLGLLPRLRDFSVANNLLEGSVPAFVSNLNVSLSYANNSGLCGGILGNCDESLFGRSFWYSFIVGFACSATSVLVSFKYYYAPWTEFKKRSNAVHPLVKKQNTEQEAELLPLAFHEQGSKELSILLERFITRMSFKALCKAADYFCIDNVLGIGKTGIMYKAKVSNSCFLAVKRLYDADKYKWKFLLEIMIPGRHRHRNIVLLHGFCIEKHERILVYKYISNGRLSDWLQSDEGHQPTKLEWPERIHIALGIARGLSWLHKRCNIVHLNLDSECVLLDKNFEPKISNFGKAKFLNQTVEDHVRMKMFLVDGLGVKGYAEKDVYDFGIILFELLTGKRLSPSTDSSDSINGHMMKYISKNLFTDPADFYDAIDYSIMGKGFDDKILRLLEVACDCVKTSLKQRPKMVDIHQTIRAMWEGYKPCFHSESLKLSMNCADHISQIECIE 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00523 614 Gene3D Ribonuclease Inhibitor 37 219 IPR032675 -
Vimu2g00523 614 SUPERFAMILY L domain-like 58 222 - -
Vimu2g00523 614 Gene3D Phosphorylase Kinase; domain 1 280 388 - -
Vimu2g00523 614 ProSiteProfiles Protein kinase domain profile. 314 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00523 614 FunFam Nuclear pore complex protein NUP107 32 193 - -
Vimu2g00523 614 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 21 583 IPR046959 -
Vimu2g00523 614 SUPERFAMILY Protein kinase-like (PK-like) 293 580 IPR011009 -
Vimu2g00523 614 Gene3D Transferase(Phosphotransferase) domain 1 389 596 - -
Vimu2g00523 614 Pfam Protein kinase domain 317 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00523 614 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00523 Vimu-Chr2 3026261 3028432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00523 10 586 Receptor kinase-like Gene Family AT3G28450 33.723 6.50e-90 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Vimu2g00523 Pkinase 2.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00523 - - vum:124831146 1072