Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00510 ATGGTCGCCGGAAGTAATTTCCGGTACTGCTCGGCGCCCATTATTCCCACTACTGCCCTGTTATTCCTCTGCCTCGTTGCTTCTTCCCTCGCAGATGAACTTCAACCACTCATGAAGTTCAAGTCCTCCATACAAAGTTCAAATGTAACTGTTTTTAATTCATGGACACAAGCAAGTTCTCCGTGCCTATTCTCTGGGATTGTTTGCAACTCCAAAGGCTTTGTTTCAGAAATCAATCTTCCGGAGAAACAGCTGGAGGGTACTGTTCCCTTTGATTCACTGTGTGAGCTTCAATCGCTTGAGAAGATATCTTTGGGGTCTAACCAGTTGCATGGAAGCATCAGTGAGGGGTTGACGAAGTGCACCAACTTGAAGCATTTGGATTTGGGTATGAATTCATTCAATGGAGCAGTGCCTGATTTGTCGAGTTTGCACAAGTTGGAGTTCTTGAATTTAAACTCCAGTGGAATTTCAGGGGTGTTTCCATGGAAATCATTGGGAAATCTAACTAGTCTTCAGTTCCTGAGTCTTGGGGATAACCTGTTGAAGGAAGATCCTTTCCCTTTGGAGGTGTTAAAACTTGAAAAATTGTATTGGCTTTACCTCACAAATTGCAGCATCACTGGGAATATTCCATTGGGGATTGGGAATCTTACTCAGCTTCAGAATCTTGAGCTTTCTGACAACCATTTGTATGGTGAGATTCCTGCTGATATAGTAAAGCTTCGCAAGCTGTGGCAACTTGAGTTATATGATAACTATCTGAGTGGGAAAATCCCAGTTGGATTTGGAAACCTGACTAGTCTAGTTAACTTTGATGCTTCTTATAATCAACTTGAAGGTGATCTTTTTGAGGTAAGGTCCTTAAAAAACCTTGCATCCCTTCACCTTTTTGGGAACAAGTTGTCAGGAGAAATTCCAAAGGAGCTTGGAGATCTCAAGAATCTCACAGAGCTTTCTCTTTATGCTAACAACCTCACTGGTCCTCTTCCTCAAAAGCTTGGCTCTTGGCAAGGCATGCAATACGTTGATGTTTCAGACAATTTTCTTTCTGGCCCAATACCACCTTTCCTGTGCAAGAACAATCAAATCAATGAACTGGCACTCTTGAACAACAGCTTCAATGGAACAATACCAGAAACGTATGCAAAATGCACATCTTTGGTTCGTTTTCGTCTGAGCAGAAACTCACTTTCGGGTGTAGTTCCTACAGGCATATGGGGCTTGCCAAATTTGGTTCTGTTTGATCTTGCAATGAACCAGTTTGAAGGTCCAGTGACATCTGATATAGCCAAAGCAAAATCTCTGGCTCAACTGTTGTTATCTAACAATAAATTCGCAGGTGAGTTACCGATGGAAATCTCTGAAGCTTCTTCATTGGTGACAATTCAGCTAAGTTCAAATCAAATTTCTGGTAACATCCCAGAAAACATTGGAAAGTTGAAGAAACTAACCACTCTTACTTTAGATGGGAACAATCTTTCTGGTGTCGTACCAGATTCCATTGGTTCTTGTATTTCTCTTAATGAGATAAACCTTGCCGGCAACTCTCTTTCTGGGGCTATACCAGGTAGCATCGGTTCTCTTCCAACTCTCAATTCATTGAACTTGTCCTCAAACAGGCTTTCTGGTGAAATTCCATCCAGTTTATCGTCTCTGAGACTTAGCCTTCTTGACTTATCAAACAATCAGTTGTTTGGTTCCATACCAGAACCTCTTTCTATTTCAGCCTTCAAAGACGGATTCATGGGAAATCCTGGCTTATGCAGCCAGACTTTGAAAGGTATCAGACCATGTTCAATGCAATCCAGAAGCTCCAGGAGACTCAGAAACCTTTTAGTCTGTTTCCTTGCTGCTGTAATGGTTCTGCTTGGAGCGTTTTTCCTCTTCACAAAACTAAGGCAGAATAAGTCTGAGAAGCCGCTGAAGACTACTTCCTGGGATGTCAAGCAGTACCATGTGTTAAACTTCAATGAGAGTGAAGTCGTTAACGGGATCAAGGCTGAGAATTTGATTGGCAAGGGAGGATCCGGCAATGTCTATCGGGTTGTGCTTAAAGGTGGGGAAGAATTTGCAGTGAAACACATATGGACTTCAAATCTAAGCGATAGGGGAAGTTGCAGGAGCACCTCAACTATGCTTAGAAGGAGTTCAAGGTCACCAGAATTTGATGCAGAGGTGGCCACTCTTAGCTCTATAAGGCATGTAAATGTTGTGAAGCTCTATTGTAGCATCACAAGTGAAGACAGCAGTTTGCTTGTTTATGAATTTTTACCAAATGGGTGCTTGTGGGACAGGTTGCACACCTGTAAAGAGAAGTCTAAGATGGGGTGGGAGGTTAGGTATGACATTGCATTGGGTGCTGCTAGAGGATTGGAGTACCTGCACCATGGGTGTGATAGACCAGTTATACATAGGGATGTCAAATCCAGTAACATATTGCTGGATGAAGAATGGAAGCCTAGGATTGCAGATTTTGGCCTTGCCAAGATTCTGAGTGGAGGAGCAGGCAACTGGACCAATGTGATTGCTGGAACACTTGGTTACTTACCTCCTGAGTATGCCTACACTTGTAAGGTGACAGAGAAGTGTGATGTTTACAGCTTTGGTGTTGTCCTGATGGAGTTGGTAACTGGGAAGAGGCCAATGGAGCCAGAGTTTGGAAACAATCATGACATTGTGCATTGGGTGTGCAGCACTAACAGGAGCAAAGAAGAGGCTCTTGAATTGGTGGATCCTACTATTGCAGAACATTTCAAAGAGGATGCCATGAAGGTGTTGAGAATTGCCTTATTGTGCACTGCCAAAATTCCAGCTTCAAGACCATCAATGAGAACGTTAGTTCATATGCTGGAAGAGGCAGATCCATGTACCCCAAACAAAATGATTACATTTGAGTTTTCATCATTTCTAAGCAGCACAAAAATTGATCTGAGAAAGGGTGATAAACACCGTATGCCTTGGTCTTGGGATCAATTAGGTGGAATTTTGGCAAGGCCGTGA 3003 0.4276 MVAGSNFRYCSAPIIPTTALLFLCLVASSLADELQPLMKFKSSIQSSNVTVFNSWTQASSPCLFSGIVCNSKGFVSEINLPEKQLEGTVPFDSLCELQSLEKISLGSNQLHGSISEGLTKCTNLKHLDLGMNSFNGAVPDLSSLHKLEFLNLNSSGISGVFPWKSLGNLTSLQFLSLGDNLLKEDPFPLEVLKLEKLYWLYLTNCSITGNIPLGIGNLTQLQNLELSDNHLYGEIPADIVKLRKLWQLELYDNYLSGKIPVGFGNLTSLVNFDASYNQLEGDLFEVRSLKNLASLHLFGNKLSGEIPKELGDLKNLTELSLYANNLTGPLPQKLGSWQGMQYVDVSDNFLSGPIPPFLCKNNQINELALLNNSFNGTIPETYAKCTSLVRFRLSRNSLSGVVPTGIWGLPNLVLFDLAMNQFEGPVTSDIAKAKSLAQLLLSNNKFAGELPMEISEASSLVTIQLSSNQISGNIPENIGKLKKLTTLTLDGNNLSGVVPDSIGSCISLNEINLAGNSLSGAIPGSIGSLPTLNSLNLSSNRLSGEIPSSLSSLRLSLLDLSNNQLFGSIPEPLSISAFKDGFMGNPGLCSQTLKGIRPCSMQSRSSRRLRNLLVCFLAAVMVLLGAFFLFTKLRQNKSEKPLKTTSWDVKQYHVLNFNESEVVNGIKAENLIGKGGSGNVYRVVLKGGEEFAVKHIWTSNLSDRGSCRSTSTMLRRSSRSPEFDAEVATLSSIRHVNVVKLYCSITSEDSSLLVYEFLPNGCLWDRLHTCKEKSKMGWEVRYDIALGAARGLEYLHHGCDRPVIHRDVKSSNILLDEEWKPRIADFGLAKILSGGAGNWTNVIAGTLGYLPPEYAYTCKVTEKCDVYSFGVVLMELVTGKRPMEPEFGNNHDIVHWVCSTNRSKEEALELVDPTIAEHFKEDAMKVLRIALLCTAKIPASRPSMRTLVHMLEEADPCTPNKMITFEFSSFLSSTKIDLRKGDKHRMPWSWDQLGGILARP 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00510 1000 ProSiteProfiles Protein kinase domain profile. 666 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00510 1000 SMART serkin_6 666 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00510 1000 Gene3D Ribonuclease Inhibitor 189 285 IPR032675 -
Vimu2g00510 1000 Gene3D Transferase(Phosphotransferase) domain 1 758 964 - -
Vimu2g00510 1000 SMART LRR_typ_2 481 504 IPR003591 -
Vimu2g00510 1000 SMART LRR_typ_2 97 121 IPR003591 -
Vimu2g00510 1000 SMART LRR_typ_2 529 553 IPR003591 -
Vimu2g00510 1000 SMART LRR_typ_2 289 312 IPR003591 -
Vimu2g00510 1000 SMART LRR_typ_2 218 242 IPR003591 -
Vimu2g00510 1000 SMART LRR_typ_2 313 337 IPR003591 -
Vimu2g00510 1000 SMART LRR_typ_2 169 194 IPR003591 -
Vimu2g00510 1000 Pfam Leucine rich repeat 507 565 IPR001611 GO:0005515
Vimu2g00510 1000 SUPERFAMILY RNI-like 77 399 - -
Vimu2g00510 1000 Gene3D Ribonuclease Inhibitor 356 607 IPR032675 -
Vimu2g00510 1000 Gene3D Ribonuclease Inhibitor 286 355 IPR032675 -
Vimu2g00510 1000 SUPERFAMILY L domain-like 288 617 - -
Vimu2g00510 1000 SMART LRR_sd22_2 266 294 - -
Vimu2g00510 1000 SMART LRR_sd22_2 313 345 - -
Vimu2g00510 1000 SMART LRR_sd22_2 169 189 - -
Vimu2g00510 1000 SMART LRR_sd22_2 97 120 - -
Vimu2g00510 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Vimu2g00510 1000 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 758 966 - -
Vimu2g00510 1000 FunFam Probable inactive receptor kinase RLK902 30 188 - -
Vimu2g00510 1000 FunFam Receptor-like protein kinase HSL1 291 597 - -
Vimu2g00510 1000 Pfam Protein kinase domain 669 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00510 1000 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vimu2g00510 1000 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 23 951 - -
Vimu2g00510 1000 SUPERFAMILY Protein kinase-like (PK-like) 652 952 IPR011009 -
Vimu2g00510 1000 FunFam Receptor-like protein kinase HAIKU2 649 757 - -
Vimu2g00510 1000 FunFam Leucine-rich receptor-like protein kinase family protein 189 285 - -
Vimu2g00510 1000 Gene3D Ribonuclease Inhibitor 29 188 IPR032675 -
Vimu2g00510 1000 ProSitePatterns Protein kinases ATP-binding region signature. 672 694 IPR017441 GO:0005524
Vimu2g00510 1000 Gene3D Phosphorylase Kinase; domain 1 649 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00510 Vimu-Chr2 2925615 2929128 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00510 18 957 Receptor kinase-like Gene Family AT1G09970 57.278 0.0 1052
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu2g00510 Pkinase 3.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00510 - - gmx:100811489 1594.33