Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00507 ATGCATGGGATAATAGAGGATCCTAACTTTCTCCATCAGTGGCAGTTAAACCCAGCTAATACAAGTAGTTTAACAGGAGCTGCTTTTGGTGAGAGTTTGCAGAAGCTCTCATTTTCTGGCAACTCAAACTTCAACCCCAAAGCATCCATGGAAGCATCACCAAATGGAAATGAAAGACCAACAAAACAGCTCAGAAACAACAGCTGGAATGGCAAGAAAAGTCAGCATCAGACACCAGAGACACAATATGCTTCATGCTCAAATCTTCTTTCATTTGTTAATTCGAATTACATAAATGAATTGGGACTAGGGAAGCCTAAGGTGGAAATGGCGTGTCCTAAAATTGATAACAGTACCCTTGCAGAGATGTTGGTCTCTCAAGGAACCTTGGGAAATCAAAACTATCACTTCAAGGCCAACCAGGAGGCCATAAAGATTGAAACACGTCCAAAGCTTTCTCAACCTCAGGACCACATAATAGCTGAAAGGAAGAGGAGAGAGAAACTCAGCCAACGGTTCATTGCTCTATCTGCTCTCGTTCCTGGCCTAAAGAAGGTGCCGAATAATGTTGTTAATGCCTTTTAA 585 0.4205 MHGIIEDPNFLHQWQLNPANTSSLTGAAFGESLQKLSFSGNSNFNPKASMEASPNGNERPTKQLRNNSWNGKKSQHQTPETQYASCSNLLSFVNSNYINELGLGKPKVEMACPKIDNSTLAEMLVSQGTLGNQNYHFKANQEAIKIETRPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLKKVPNNVVNAF 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00507 194 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 194 IPR011598 GO:0046983
Vimu2g00507 194 Gene3D - 145 191 IPR036638 GO:0046983
Vimu2g00507 194 MobiDBLite consensus disorder prediction 40 81 - -
Vimu2g00507 194 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 186 IPR036638 GO:0046983
Vimu2g00507 194 PANTHER BHLH TRANSCRIPTION FACTOR 23 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00507 Vimu-Chr2 2895302 2898223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00507 153 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 85.294 8.93e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00507 - - gmx:100798018 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00507 2 2895302 2898223 Vimu2g00507 2 2895302 2898223 ECH
Vimu11g03416 11 55361731 55364608 Vimu2g00507 2 2895302 2898223 PCT