Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00479 ATGGGGAGAGGGAAGATTGCGATTCGAAGGATCGACAACTCCACTAGCCGACAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCTAGAGAATTATCAATTCTCTGTGATGCTGAAGTTGGATTGATGGTGTTTTCCAGCACTGGAAAGCTTTATGATTATGCAAGCACAAGCATGAAATCTGTTTTTGAGCGCTACAACAAGCTAAAAGAGGAACATCATCACCTCATGAATCCGGCTTCAGAAGAAAAGGAACGCATAAACTTGACAGATAAGCTTGGTAATACAACTCGGCAAGCTCGGCAACAAGGATCACCCACATGA 333 0.4264 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYASTSMKSVFERYNKLKEEHHHLMNPASEEKERINLTDKLGNTTRQARQQGSPT 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00479 110 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 97 - -
Vimu2g00479 110 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu2g00479 110 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu2g00479 110 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu2g00479 110 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Vimu2g00479 110 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Vimu2g00479 110 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Vimu2g00479 110 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu2g00479 110 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vimu2g00479 110 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu2g00479 110 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Vimu2g00479 110 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00479 Vimu-Chr2 2732352 2739759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00479 1 87 MADS-box Gene Family AT2G14210 79.545 2.75e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu2g00479 SRF-TF 2.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00479 K09264 - gmx:100808145 169.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00479 2 2732352 2739759 Vimu2g00479 2 2732352 2739759 ECH
Vimu11g03398 11 55012656 55023948 Vimu2g00479 2 2732352 2739759 PCT