Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00477 ATGCCCAAAGTGACTGACTGGCACATGGGGAATGGAGGTTTTAGCACACAAACTATTATCTTGTGCTATGCAATGGCAACCGTTTCATTCCTCCCTCATACAAATACACTATCGTGTAGCTACCTCACGTTCTGGGAAAATGATGCATGGCTGCAACTGCGAGGAGACGCGGCAGTTTCAGGTTCAGAAATCCAAGTCACATCTAACAGGGAAGGGAATAACAACAGTTACAGTGTTGGACGTGTCACACCTGTTATAATGATGCATCTCTGGGATAAGAGTTCTGGGAAACTTGCAGACTTCACTACCCACTTTTCCTTCTCTGTTTATTCAAATGAACTTCAGTTTGGAGATGGGTTGGCATTCTTTTTGGCGGATCCTGGGCTTCCCCTTTTGAATAACATCACGGAAGGGGGTGGTCTTGGCCTTGTGGATGGTGACAGAGTGTTGAACTCAACTCAACACTCGTTTGTGGCAGTGGAGTTTGACACCTTCCAGAATCCATGGGACCCCGAAGACCCTCATGTAGGTATGAACTTCAACTCTATGAAGTCCAATGTAACTGCATCATGGTTAGCTGTCCTGTCACAAGATGAGGTTTATAATTGTAGCATTGAGTACAATTCCACCACTTTTTGTTTAACTGCTTCTTTCACCGGCTACTATTACCAAAAATATGGTCGGATACAAAATAGCCTTTCGTACAAAGTTGATTTGAGAAAGCACTTACCAGAGAGGGTTATGGTTGGCTTCTCCGCAGCTGCGGGATATTATGTTGAGGAGCATATTCTGAAGTCATGGTCATTTAATTCAGGCTTAGAAATAGAAATTGGTGATACTTCCGGTGATGATAATAGAGTAGTTGAGTGGGTAGGAATTGGGATAGGTTTGGGGGTTTTCTTAGGATTGGCTTGTTTTCTGATGTGGAGAAGGATAAAAGGGAATGAAAAAGTGTTGGAACTTGATCTAAAAATGGATGATGAGTTCCAAAAGGGAATAGGACCCAAAAGGTTTCGCTACAAAGAACTGGAAACTGCAACAAGTAAATTTTCAGAGTCAGAGAAGCTTGGACAAGGAGGCTTCGGTGACGTGTATAAAGGTTTTCTGAAGGATTTAAACTCCTACGTTGCAATCAAGAGGGTATCGAGAGAATCAAAGCAGGGGGTTAAGGAATATGCTACTGAAGTTAAGATCATTAGCCAGTTGAGGCACAAGAATCTGGTGCAACTACTTGGTTGGTGCCATAGAGAAAAAGATCTGCTTCTTGTGTATGAATTCATGCCAAACGGAAGCTTAGATTTCCATTTATATGGGAAGGGTTTCTTGACATGGCCAGTGAGGTATAACATAGCTCTAGGCTTGGCTTCAGCGTTGCTATACCTGCAAGAAGAGTGGGAACAATGTGTTCTTCACAGAGACATAAAATCAAGCAACATAATGTTGGATTCAAGCTTCAACGCTAAGCTTGGTGATTTTGGTCTGGCTAGATTGGTGGATCATGAAAAGGGGTCACAAACGACGTTTATAGCTGGGACAAGAGGGTACATTGCACCAGAATATGTGACCACAGGGAAAGCTTATAAGGAATCTGACATATACAGTTTTGGGGTTGTGTTATTGGAGATAGCGAGTGGAAGAAAAGCCATTGATCTAAAGGCACAGGAGGGGAAGGTATCAATAGTAGAGTGGGTTTGGGAGATGTATGAATTGGGAGAGATGTTGAAAGTTGCAGACCCAAAACTGTGTGGAGCATTTCATGATGAGCAGATGAAAAGGTTAGTGGGCATAGGTCTTTGGTGTGCTCATCCAAATTACAGATTCAGGCCTTCTGTCATGCAAGTCATTCAGATGCTTAAATTTGAAGCTGAATTGCCAACTCTGCCAAATAGAAAAAATATGAGTTCCAAAGGTGTTGATGAGCAGTGCCTGGGATGGGCGGCAAGAGATGCATCCGGAGTTCTATCACCTTACAAATTCAGTCGCAGTCATGAGATTGCTGGGATTGTGACAAAGGTTGGCCCTAATGTCCACCGTTTCAATGTTGGTGACCATGTTGGAGTGGGGACTTATGTCAACTCTTGTAGGGATTGTGAGTATTGTAACGAAAAACAAGAAGTTCTTTGTACCAAGGGATCAGTCTTCACTTTTAACGGTGTTGATTTTGATGGTACAATAACAAAAGGAGGATACTCAAGTTACATAGTAGTCCATGAGAGGTACTGCTTCACGATACCAAAAAACTATCCATTGGCTTCAGCAGCTCCTTTGCTTTGTGCTGGGGTTACTGTTTATTCTCCAATGGTGCGCCACAAGATGAATCAACCTGGAAAATCTCTTGGGGTGATTGGTCTTGGTGGCCTTGGTCATATGGCAGTGAAATTCGGAAAGGCATTTGGTTTGAGTGTAACAGTTTTTAGCACTAGTGTGTCCAAGAAAGAAGAGGCACTGACCTTGCTTGGTGCAGACAAATTCGTTGTTTCATCTAATCAAGAGGAAATGAAGATCATGAACAACACTGATATTGACAGACCCTCGTACTTCTTTGTCGCGTTGGCTAAATCGCTGGACTTTATAATCGACACAGCATCTGGTGATCACCCATTTGATCCTTACATGTCACTTTTGAAGCCATATGGTGTTTTTGTCCTAGTTGGTTTCCCTAGTGAAATCAAATTCAGCCCTGCAAGCCTTAATATAGGATCAAAGACTTTTGCCGGAAGCGTTACAGGTGGTACAAAAGATATACAAGAGATGATTGACTTCTGTGCTGCAAACGATATTCACCCAAAGATAGAGGTGATTCCAATCGAGTATGCCAATGAAGCTCTTGAGAGGCTCGTAAGTAGAGACGTCAAATACCGGTTTGTAATTGATATTGCGAACTCCCTAAAAGAAAATTAA 2901 0.425 MPKVTDWHMGNGGFSTQTIILCYAMATVSFLPHTNTLSCSYLTFWENDAWLQLRGDAAVSGSEIQVTSNREGNNNSYSVGRVTPVIMMHLWDKSSGKLADFTTHFSFSVYSNELQFGDGLAFFLADPGLPLLNNITEGGGLGLVDGDRVLNSTQHSFVAVEFDTFQNPWDPEDPHVGMNFNSMKSNVTASWLAVLSQDEVYNCSIEYNSTTFCLTASFTGYYYQKYGRIQNSLSYKVDLRKHLPERVMVGFSAAAGYYVEEHILKSWSFNSGLEIEIGDTSGDDNRVVEWVGIGIGLGVFLGLACFLMWRRIKGNEKVLELDLKMDDEFQKGIGPKRFRYKELETATSKFSESEKLGQGGFGDVYKGFLKDLNSYVAIKRVSRESKQGVKEYATEVKIISQLRHKNLVQLLGWCHREKDLLLVYEFMPNGSLDFHLYGKGFLTWPVRYNIALGLASALLYLQEEWEQCVLHRDIKSSNIMLDSSFNAKLGDFGLARLVDHEKGSQTTFIAGTRGYIAPEYVTTGKAYKESDIYSFGVVLLEIASGRKAIDLKAQEGKVSIVEWVWEMYELGEMLKVADPKLCGAFHDEQMKRLVGIGLWCAHPNYRFRPSVMQVIQMLKFEAELPTLPNRKNMSSKGVDEQCLGWAARDASGVLSPYKFSRSHEIAGIVTKVGPNVHRFNVGDHVGVGTYVNSCRDCEYCNEKQEVLCTKGSVFTFNGVDFDGTITKGGYSSYIVVHERYCFTIPKNYPLASAAPLLCAGVTVYSPMVRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSVSKKEEALTLLGADKFVVSSNQEEMKIMNNTDIDRPSYFFVALAKSLDFIIDTASGDHPFDPYMSLLKPYGVFVLVGFPSEIKFSPASLNIGSKTFAGSVTGGTKDIQEMIDFCAANDIHPKIEVIPIEYANEALERLVSRDVKYRFVIDIANSLKEN 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00477 966 ProSitePatterns Protein kinases ATP-binding region signature. 356 379 IPR017441 GO:0005524
Vimu2g00477 966 Gene3D - 759 929 - -
Vimu2g00477 966 SMART serkin_6 350 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00477 966 CDD lectin_legume_LecRK_Arcelin_ConA 37 273 IPR001220 GO:0030246
Vimu2g00477 966 Gene3D - 35 281 - -
Vimu2g00477 966 FunFam Putative cinnamyl alcohol dehydrogenase 6 930 959 - -
Vimu2g00477 966 FunFam Cinnamyl alcohol dehydrogenase 759 929 - -
Vimu2g00477 966 CDD CAD1 644 958 IPR047109 GO:0016616
Vimu2g00477 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Vimu2g00477 966 PANTHER - 65 625 - -
Vimu2g00477 966 SUPERFAMILY Concanavalin A-like lectins/glucanases 37 273 IPR013320 -
Vimu2g00477 966 CDD STKc_IRAK 356 619 - -
Vimu2g00477 966 ProSiteProfiles Protein kinase domain profile. 350 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00477 966 Gene3D Phosphorylase Kinase; domain 1 335 426 - -
Vimu2g00477 966 FunFam Lectin-domain containing receptor kinase A4.3 427 636 - -
Vimu2g00477 966 SUPERFAMILY GroES-like 656 777 IPR011032 -
Vimu2g00477 966 Gene3D Transferase(Phosphotransferase) domain 1 427 639 - -
Vimu2g00477 966 ProSitePatterns Legume lectins beta-chain signature. 158 164 IPR019825 -
Vimu2g00477 966 Pfam Zinc-binding dehydrogenase 786 923 IPR013149 -
Vimu2g00477 966 SUPERFAMILY Protein kinase-like (PK-like) 332 620 IPR011009 -
Vimu2g00477 966 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 779 806 IPR029752 -
Vimu2g00477 966 Gene3D - 659 959 - -
Vimu2g00477 966 Pfam Legume lectin domain 38 272 IPR001220 GO:0030246
Vimu2g00477 966 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 749 927 IPR036291 -
Vimu2g00477 966 ProSitePatterns Legume lectins alpha-chain signature. 243 252 IPR000985 -
Vimu2g00477 966 Pfam Alcohol dehydrogenase GroES-like domain 659 743 IPR013154 -
Vimu2g00477 966 Pfam Protein kinase domain 351 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00477 966 FunFam L-type lectin-domain containing receptor kinase IX.1 335 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00477 Vimu-Chr2 2715290 2723790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00477 20 630 Receptor kinase-like Gene Family AT5G10530 45.253 2.19e-163 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu2g00477 Pkinase 5.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00477 - - gmx:100780181 766.533