LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu2g00476	ATGGCTCCTTGCCATGTTGGTCTCCATGCAACAAACCATCTATTCTGTGTAATGATGTTCTTGTTTCTTATGATCAGATTTGCAAACCCACTTTCATTTCGTCACCAGGGATTTGAGTATAACGATACAAGGATTGAAGGAGATGCTGTTTTGTCACAATCAGAAATCCAACTCACTAAAACCACCAGGTATCAGAGCAATGCTTACAGTGTTGGGAGAGTCACAAGTTTTGAAAGATTGCACCTTTGGGACAACATCACAGGAAAATTGACCGATTTCACTACCCAATTTTCCTTTGTCATTTTCTCAAACGAGACTAGTTTTGGAGATGGCTTGGCTTTTTTCTTAGCAGATCCAGGGCTTCCTCTTTCGAATCAAATACAACAAGGTGGTGGTCTTGGTCTTCTGGATGGTAATCAGTTATTGAATTCAGCTAAACATCCATTTGTAGCTGTGGAGTTTGACACATTCCAAAATTCATGGGATCCACCTGGCACTCATGTAGGTATAAATTTCAACTCCATGAAATCTAACAAAACTGTTCCATGGTCCCTTGATATTAGGCAAATGAAAGTTTGTTATTGTGTGATTGAGTACAATGCAACTACTCACATTTTGAATGTTTCTTTCTCTGGAAATGCCGAGCCAACAAAAAGATATATCTCATGCAATGTTGACCTGAGATATTACCTACCAGAGTGGGTTATATTTGGTTTCTCAGCTGCTACAGGAGTTATGTTTGAGTTGAACACACTGCTGTCGTGGTCATTCCATTCAACTTTACAAAGTAATAAGAATCTCTCAAATAAGATACCTCCAATTGCAGTCTCACCAAGCCCAAATCCTAGTCCTTCACCATTTTCCACTGACACTATTAGCCCTAAACAAGAGGGAAACAAAGGTTTATTGATGGGACTAGAAGTTGGGGTAGGCATAGCTACTACTTTTCTTATTTTAGGGTTGGTTTGTGTTTTAATGTGGAAGAGGAGGGCTAAAGGGAAAAGAGAAGATTCAATTATTGATCTGAGTATGGATGATGAATTCCAAAAGGGCATTGGACCCAAAAGATTTTGCTATAAGGAATTGGCATCTGCAACAAGAAACTTTGCAGAGTCACAAAAGATTGGACAAGGTGGTTTTGGGGGTGTGTATAAAGGCTATTTGAAAGAATTGAACACCAACGTTGCTATAAAGAGGATATCAAGAGAATCTAAACAAGGAGCAAAGGAATATGCAAGTGAAGTTAAGATCATCAGCAGACTAAGGCACAGGAATTTAGTGCAATTAATTGGTTGGTGCCACATGAAGAAAGATCTCCTTCTTATATATGAGTTCATGCAAAATGGTAGCTTAGATTCCCACCTATACAGTGGAAAAAGCATCTTGACATGGCAGATGAGGTACAACATTGCAATGGACTTAGCTCTGGCAGTGTTGTACCTTCATGAAGAATGGGAGCAGTGTGTGCTTCATAGGGACATTAAATCCAGCAACATTATGTTGGATTCAAATTTCAATGCTAAGCTTGGGGATTTTGGGTTAGCCAGGCTTGTTGATCATGAGAAAGGATCCCAAACTACAATTCTAGCAGGGACAAGAGGCTACATAGCCCCTGAATACTTCACTACAGGGAAGGCTAGGAAGGAATCTGATATATACAGTGTTGGGATTGTTTTACTGGAATTAGCCACTGGAAGAAAACCAGTTGACCTGAATGCCATGGAAGGCCAAATAACCATATTTGAGTGGGCTTGGGAGCTCCACCAATTGGGAAAGTTACTTGAAGTGGTAGACAAAAAGCTTGGAGGAGCATTTGATGAGGAACAGATGAAACGTTTAGTGATTGTTGGCCTTTGGTGTGCCAATCCAGATCATACATCCAGACCATCAGTAAGGCAATTGATTCAAGTGCTTAAGTTTGAAGCTCCTTTACCACTTCTTCAACAAAAATTGTCTGAGCCTTATTATCATTCTCCAACTATGAGTACAATATTTGCTTCAATTTCTTCTCCCCTCTCCGGCTACATGTTAGAACCAAATACAATGTAA	2049	0.3978	MAPCHVGLHATNHLFCVMMFLFLMIRFANPLSFRHQGFEYNDTRIEGDAVLSQSEIQLTKTTRYQSNAYSVGRVTSFERLHLWDNITGKLTDFTTQFSFVIFSNETSFGDGLAFFLADPGLPLSNQIQQGGGLGLLDGNQLLNSAKHPFVAVEFDTFQNSWDPPGTHVGINFNSMKSNKTVPWSLDIRQMKVCYCVIEYNATTHILNVSFSGNAEPTKRYISCNVDLRYYLPEWVIFGFSAATGVMFELNTLLSWSFHSTLQSNKNLSNKIPPIAVSPSPNPSPSPFSTDTISPKQEGNKGLLMGLEVGVGIATTFLILGLVCVLMWKRRAKGKREDSIIDLSMDDEFQKGIGPKRFCYKELASATRNFAESQKIGQGGFGGVYKGYLKELNTNVAIKRISRESKQGAKEYASEVKIISRLRHRNLVQLIGWCHMKKDLLLIYEFMQNGSLDSHLYSGKSILTWQMRYNIAMDLALAVLYLHEEWEQCVLHRDIKSSNIMLDSNFNAKLGDFGLARLVDHEKGSQTTILAGTRGYIAPEYFTTGKARKESDIYSVGIVLLELATGRKPVDLNAMEGQITIFEWAWELHQLGKLLEVVDKKLGGAFDEEQMKRLVIVGLWCANPDHTSRPSVRQLIQVLKFEAPLPLLQQKLSEPYYHSPTMSTIFASISSPLSGYMLEPNTM	682

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu2g00476	682	FunFam	L-type lectin-domain containing receptor kinase IX.1	29	270	-	-
	Vimu2g00476	682	Gene3D	Transferase(Phosphotransferase) domain 1	446	657	-	-
	Vimu2g00476	682	FunFam	Lectin-domain containing receptor kinase A4.3	446	658	-	-
	Vimu2g00476	682	Pfam	Protein kinase domain	370	636	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu2g00476	682	Gene3D	Phosphorylase Kinase; domain 1	354	445	-	-
	Vimu2g00476	682	ProSitePatterns	Legume lectins beta-chain signature.	150	156	IPR019825	-
	Vimu2g00476	682	Gene3D	-	29	273	-	-
	Vimu2g00476	682	SUPERFAMILY	Protein kinase-like (PK-like)	353	665	IPR011009	-
	Vimu2g00476	682	ProSiteProfiles	Protein kinase domain profile.	369	647	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu2g00476	682	CDD	STKc_IRAK	375	639	-	-
	Vimu2g00476	682	Pfam	Legume lectin domain	31	267	IPR001220	GO:0030246
	Vimu2g00476	682	CDD	lectin_legume_LecRK_Arcelin_ConA	31	261	IPR001220	GO:0030246
	Vimu2g00476	682	PANTHER	-	54	642	-	-
	Vimu2g00476	682	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	489	501	IPR008271	GO:0004672\|GO:0006468
	Vimu2g00476	682	ProSitePatterns	Protein kinases ATP-binding region signature.	375	398	IPR017441	GO:0005524
	Vimu2g00476	682	SUPERFAMILY	Concanavalin A-like lectins/glucanases	30	264	IPR013320	-
	Vimu2g00476	682	ProSitePatterns	Legume lectins alpha-chain signature.	231	240	IPR000985	-
	Vimu2g00476	682	SMART	serkin_6	369	644	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu2g00476	682	FunFam	L-type lectin-domain containing receptor kinase IX.1	354	445	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu2g00476	Vimu-Chr2	2710836	2712884	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu2g00476	17	657	Receptor kinase-like Gene Family	AT5G10530	44.512	3.66e-172	505

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vimu2g00476		Pkinase	1e-52	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu2g00476	-		-	gmx:100814713	1079.7