Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00459 ATGCCCATGTCTTCCTTTCATCTTCTTCCTTACCAGACAACCACAGAAGCAATAGGGCAGGATTTTGTGGTCTGGTTGATTTTGAGGAAAATGGTGAGGAAGAAGATACCGATCAAGAAGATCGTGGACGTGACTGCGAGGCAGGTGACATTCTCAAAGAGAAAGAGTGGCCTTTTGAAAAAGGCACGTGAGCTTTCTCTTCTTTGCGATGCTGAGATTGCTCTCATAGTCTTTTCACCTGGTGGCAAACTCTTCGACTATGCAAGTTCAAGTATGCAGAAAATAACTGAAAGATATATTTCATGCTCAGAGTTGAACCTTGACAAACTAGACCAGTCATATTCTACGGAGCAGGGTAGAAATGCTTCTTTGAACAAGCAATTGGAAGATAGGAGTCGTGAAATGAGACAGCTGAATGGAGAAGAGTTGGAAGGATTGACCCTAAAGGAACTACAGAAATTAGAAGAACGACTTGATTCATCCATGAACCGTCTTTATAAAACCAAGGTTCAAAATTTTCTATCAGATATCAGCATACTTACGCAGAAGCAAAACAAACTCAAGGAAGATAACCAACTGATAAAACAGAAAATAAAGCATGTACAAGAGCAATCCTTTGACACCTCCCTCACATTGGGGCTACCTTTGCCATCTGCTTCAAAATAG 666 0.4099 MPMSSFHLLPYQTTTEAIGQDFVVWLILRKMVRKKIPIKKIVDVTARQVTFSKRKSGLLKKARELSLLCDAEIALIVFSPGGKLFDYASSSMQKITERYISCSELNLDKLDQSYSTEQGRNASLNKQLEDRSREMRQLNGEELEGLTLKELQKLEERLDSSMNRLYKTKVQNFLSDISILTQKQNKLKEDNQLIKQKIKHVQEQSFDTSLTLGLPLPSASK 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00459 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 87 IPR002100 GO:0003677|GO:0046983
Vimu2g00459 221 SMART madsneu2 31 90 IPR002100 GO:0003677|GO:0046983
Vimu2g00459 221 Coils Coil 121 141 - -
Vimu2g00459 221 Pfam K-box region 120 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu2g00459 221 ProSiteProfiles MADS-box domain profile. 31 91 IPR002100 GO:0003677|GO:0046983
Vimu2g00459 221 ProSiteProfiles K-box domain profile. 114 204 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu2g00459 221 CDD MADS_MEF2_like 33 104 IPR033896 GO:0000977|GO:0045944
Vimu2g00459 221 SUPERFAMILY SRF-like 33 110 IPR036879 GO:0003677|GO:0046983
Vimu2g00459 221 Coils Coil 151 171 - -
Vimu2g00459 221 Coils Coil 184 204 - -
Vimu2g00459 221 ProSitePatterns MADS-box domain signature. 33 87 IPR002100 GO:0003677|GO:0046983
Vimu2g00459 221 PANTHER SERUM RESPONSE FACTOR HOMOLOG 33 182 - -
Vimu2g00459 221 Gene3D - 43 129 IPR036879 GO:0003677|GO:0046983
Vimu2g00459 221 PRINTS MADS domain signature 53 68 IPR002100 GO:0003677|GO:0046983
Vimu2g00459 221 PRINTS MADS domain signature 68 89 IPR002100 GO:0003677|GO:0046983
Vimu2g00459 221 PRINTS MADS domain signature 33 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00459 Vimu-Chr2 2614235 2619777 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00459 31 205 MADS-box Gene Family AT2G22540 45.251 2.89e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu2g00459 K-box 1.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00459 - - vra:106774983 357.451