Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00458 ATGTGTATTGTTATCTGGGTTGAAATTTGGATGATTATGAAATTGTTTGAGAGTAGAATGGCAAGAAAGAAGATACCGATCAAGAAGATCGACAACATAAACGCGAGGCAAGTAACATTCTCAAAGAGGAGAAAAGGTCTTTTCAAGAAGGCTCAGGAACTGTCAACTCTCTGTGATGCTGAGATTGCTCTCATAGTCTTTTCCGCAACCAGCAAGCTCTTTGAATACGCCACTTCAAGCGCGCAACAAATAATTGAAAGGCGTAATCGGCATTCAGGTGTTCCAGGATCAGACATTCCATCCATTGAAAAACAGCTTGGAAGTAACTCTTTTGACATGCTGCACAAGGAAATAGAAGATAAGACTCATGAACTGTGTCAGTTGAACGGACAAGACTTGCAAGGACTGACAATACAAGAGTTGCAGAAACTGGAGGAACTTCTCCAAAATCGTTGGATCGCTATTTCAAAAATTAAGGAAGAAAAAATGACACAAGAGATCAACAGCCTTAAAACAAAGGAGGCCGAACTTACAGAAGAGAACCAGAAACTGAAGCAGAAGTTGGTTCGAGAACAGTGTTATGAGTCAATTACTAGCAGTTCATCTGATTTTCCTCCAGACAATGGTAGTTCTGACACATCTCTCAAGTTGGGGTTAGTTTATACTTCATGCTGTGTTTATTTGAATGAAATGGTTCGAGTGAACAGATTAGCTTCCATTTCTGCATGA 729 0.3992 MCIVIWVEIWMIMKLFESRMARKKIPIKKIDNINARQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSATSKLFEYATSSAQQIIERRNRHSGVPGSDIPSIEKQLGSNSFDMLHKEIEDKTHELCQLNGQDLQGLTIQELQKLEELLQNRWIAISKIKEEKMTQEINSLKTKEAELTEENQKLKQKLVREQCYESITSSSSDFPPDNGSSDTSLKLGLVYTSCCVYLNEMVRVNRLASISA 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00458 242 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Vimu2g00458 242 Pfam K-box region 108 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu2g00458 242 FunFam Transcription factor, MADS-box 32 101 - -
Vimu2g00458 242 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Vimu2g00458 242 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Vimu2g00458 242 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Vimu2g00458 242 SUPERFAMILY SRF-like 20 94 IPR036879 GO:0003677|GO:0046983
Vimu2g00458 242 Gene3D - 32 95 IPR036879 GO:0003677|GO:0046983
Vimu2g00458 242 ProSiteProfiles K-box domain profile. 104 194 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu2g00458 242 CDD MADS_MEF2_like 21 93 IPR033896 GO:0000977|GO:0045944
Vimu2g00458 242 Coils Coil 160 190 - -
Vimu2g00458 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Vimu2g00458 242 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Vimu2g00458 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 20 182 - -
Vimu2g00458 242 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00458 Vimu-Chr2 2601477 2611801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00458 20 221 MADS-box Gene Family AT2G22540 45.378 5.11e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu2g00458 K-box 9.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00458 - - gmx:100779453 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03332 11 53904105 53921008 Vimu2g00458 2 2601477 2611801 PCT