Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00456 ATGGGAGAAGGAAGAGGAATGGTAGAAGATGAAGAGGAAAGGTCAATGTCGATGTCAGCAGTGAACGGCCATGTGAAACTCGTTTCTGCAATTCCCAGTGCAATTACCAAAACACCCTCTGCAGTATCTTACTCGTTCCAAGGGAGTGAGGAAGGTCACGGAGGAGGGACGAGAGGGGAGGCGGAGCGCTGGCTGTACACGGCGAACAAGGTTTTAAGCGCACGTGACTTGCACGGGGCTCGCTCATTTGCGATTCGGGCCCGAGAGTCCGACCCGAGATACGAGCCCACCCAGCTTCTTCTCACGGTTATCGATACCCTCATGGCCGGCGAGGCCCGGATCAACGACCACCACGACTGGTACGCCATCCTCCAAGTCCTCCGTTACACTCAGAACATCGACTATATCGCCGTCCAGTACCGCCGCCTCGCCACCCAGCTCGACCCTCACCACAACCCATTTGCCTTCGCCGCTCACGCCTTCACGCTCGTCAACGACGCCTGGTCGATACTCTCCAACTCCACCAAGAAAGCCTTCTACGACAACCAACTCAGAATCCTCACTCAACCCCCACCCCCGCCTCCTCCTCCGCCTCCTCCACCGCCGCCGCAACCTCCCGCTCCTCCGGTTACCTTCTTCCCGATTCAACCTCCGCAACCAAACTTAAACCCGAACCCGAACCCGACCACGACCCCGTACCAAGTCCCTCAGCGGGAAAAAAGCCCTAGGGCTTGGGTGGAGGTGCCGAGTCAGGAGGACAATGCGAGCGAGTTGACTCGGGCGAGTGAGACCGGGAGCGAAGGGGCGAGTTTCTGGACCGCGTGCCCTTATTGTTATGTTATGTACGAGTATCCGAAGGTGTACGTGGATTGTACGTTGCGGTGTCAGAGTTGTCGGAGGGGGTTTCATGCGGTGGTGGTACGGTCGCCGCCGAAAGATGGTTTTGGCTCGTTTAGCAGTTGGGGTTTTTTCCCTGTGGGGTTTTCTGGAGATTTTAGAGACATTAGCGGTTCTTCTTCGAAGTGGAACCCTTTTTCCCCTTTGATTCCTTGCGCTTTCAAAGGGGAGGTGCGGCAGAGTGGGAAGCACCAGAAGGGGCCTTATGTTTTCTACGACGATGACGCGTCTGCGGAGTTCGCGGAGGGTTCCGACACAACGAAGGATGATTCCGACGATGATGATTGGCATGGCGGGAATCAGAAGGGAACAGCGACGGTGGCGAAGAAGAGGACGAGGAAGAGGGGGAGGAAGAGAAGAAATGGTAATGGTGGTGATGTCAGGAGGGAACCGATTGAGAGGCCTAGGAGAGGGGTTCGTAGTCATACTGGTGGTGATGAGGGGAATGTTAACGGGAATGTGGAGAATGGTGAGGTTGCGGATGGTGATGGTGATGGTGATGGTGTTGCTGCGGCGGCAGATTCTGGTAAGAAGGGTGCGTTGGGTGGTTCTCGGAGGAGGAGTGAGAGGAACGTGGGGAAGTTAGATTTGAATGTAGAATTCAGCAATGAGGTGGAGGAGTCTTTGCATGAAGTGGATGAAGGGAATGAAAATGGGAATGGGAATGGGAATGCTGAGGATAATATTGAAGGGATTGGATTTTTTGAAGGGCTGGACGAGTTCCTCAGTAGCTTGCCCATTCTGAATGCTGTTGCAGATGACAAGGTTAAGGGTCATTAG 1677 0.548 MGEGRGMVEDEEERSMSMSAVNGHVKLVSAIPSAITKTPSAVSYSFQGSEEGHGGGTRGEAERWLYTANKVLSARDLHGARSFAIRARESDPRYEPTQLLLTVIDTLMAGEARINDHHDWYAILQVLRYTQNIDYIAVQYRRLATQLDPHHNPFAFAAHAFTLVNDAWSILSNSTKKAFYDNQLRILTQPPPPPPPPPPPPPPQPPAPPVTFFPIQPPQPNLNPNPNPTTTPYQVPQREKSPRAWVEVPSQEDNASELTRASETGSEGASFWTACPYCYVMYEYPKVYVDCTLRCQSCRRGFHAVVVRSPPKDGFGSFSSWGFFPVGFSGDFRDISGSSSKWNPFSPLIPCAFKGEVRQSGKHQKGPYVFYDDDASAEFAEGSDTTKDDSDDDDWHGGNQKGTATVAKKRTRKRGRKRRNGNGGDVRREPIERPRRGVRSHTGGDEGNVNGNVENGEVADGDGDGDGVAAAADSGKKGALGGSRRRSERNVGKLDLNVEFSNEVEESLHEVDEGNENGNGNGNAEDNIEGIGFFEGLDEFLSSLPILNAVADDKVKGH 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00456 558 MobiDBLite consensus disorder prediction 187 231 - -
Vimu2g00456 558 MobiDBLite consensus disorder prediction 503 526 - -
Vimu2g00456 558 Gene3D DnaJ domain 108 189 IPR036869 -
Vimu2g00456 558 MobiDBLite consensus disorder prediction 406 421 - -
Vimu2g00456 558 SMART dnaj_3 118 176 IPR001623 -
Vimu2g00456 558 MobiDBLite consensus disorder prediction 380 490 - -
Vimu2g00456 558 MobiDBLite consensus disorder prediction 185 263 - -
Vimu2g00456 558 MobiDBLite consensus disorder prediction 422 442 - -
Vimu2g00456 558 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 55 422 - -
Vimu2g00456 558 ProSitePatterns Nt-dnaJ domain signature. 161 180 IPR018253 -
Vimu2g00456 558 SUPERFAMILY Chaperone J-domain 113 185 IPR036869 -
Vimu2g00456 558 MobiDBLite consensus disorder prediction 380 398 - -
Vimu2g00456 558 Pfam DnaJ domain 119 181 IPR001623 -
Vimu2g00456 558 ProSiteProfiles dnaJ domain profile. 119 184 IPR001623 -
Vimu2g00456 558 CDD DnaJ 119 173 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00456 Vimu-Chr2 2589781 2591524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00456 60 557 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 37.259 1.33e-89 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00456 - - gmx:100818960 622.083